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2017

A Hierarchical Feature and Sample Selection Framework and Its Application for Alzheimer's Disease Diagnosis

An, L., Adeli, E., Liu, M., Zhang, J., Lee, S. W. & Shen, D. Mar 30 2017 In : Scientific Reports. 7, 45269

Research output: Research - peer-reviewArticle

Nucleotides
Polymorphism
Classifiers
Magnetic resonance
Imaging techniques
6 Citations

A novel relational regularization feature selection method for joint regression and classification in AD diagnosis

Zhu, X., Suk, H. I., Wang, L., Lee, S. W., Shen, D. & Alzheimer's Disease Neuroimaging Initiative May 1 2017 In : Medical Image Analysis. 38, p. 205-214 10 p.

Research output: Research - peer-reviewArticle

Joints
Feature extraction
Alzheimer Disease
Neuroimaging
Labels
2 Citations
Renal Cell Carcinoma
Vascular Endothelial Growth Factor A
Neoplasms
Angiogenesis Inhibitors
Neoplasm Metastasis
1 Citations

Automatic cystocele severity grading in transperineal ultrasound by random forest regression

Ni, D., Ji, X., Wu, M., Wang, W., Deng, X., Hu, Z., Wang, T., Shen, D., Cheng, J. Z. & Wang, H. Mar 1 2017 In : Pattern Recognition. 63, p. 551-560 10 p.

Research output: Research - peer-reviewArticle

Ultrasonics
Distance measurement
4 Citations

Brain atlas fusion from high-thickness diagnostic magnetic resonance images by learning-based super-resolution

Zhang, J., Zhang, L., Xiang, L., Shao, Y., Wu, G., Zhou, X., Shen, D. & Wang, Q. Mar 1 2017 In : Pattern Recognition. 63, p. 531-541 11 p.

Research output: Research - peer-reviewArticle

Magnetic resonance
Brain
Fusion reactions
Electric fuses
Imaging techniques

Can we predict subject-specific dynamic cortical thickness maps during infancy from birth?

Meng, Y., Li, G., Rekik, I., Zhang, H., Gao, Y., Lin, W. & Shen, D. Jun 1 2017 In : Human Brain Mapping. 38, 6, p. 2865-2874 10 p.

Research output: Research - peer-reviewArticle

Parturition
Brain
Cerebral Cortex
Human Development
Learning
3 Citations

Concatenated spatially-localized random forests for hippocampus labeling in adult and infant MR brain images

Zhang, L., Wang, Q., Gao, Y., Li, H., Wu, G. & Shen, D. Mar 15 2017 In : Neurocomputing. 229, p. 3-12 10 p.

Research output: Research - peer-reviewArticle

Hippocampus
Brain
Forests
Labeling
Labels
4 Citations

Connectivity strength-weighted sparse group representation-based brain network construction for MCI classification

Yu, R., Zhang, H., An, L., Chen, X., Wei, Z. & Shen, D. May 1 2017 In : Human Brain Mapping. 38, 5, p. 2370-2383 14 p.

Research output: Research - peer-reviewArticle

Brain
Cognitive Dysfunction
Group Structure
Alzheimer Disease
Brain Diseases
6 Citations

Deep ensemble learning of sparse regression models for brain disease diagnosis

Suk, H. I., Lee, S. W. & Shen, D. Apr 1 2017 In : Medical Image Analysis. 37, p. 101-113 13 p.

Research output: Research - peer-reviewArticle

Brain Diseases
Learning
Brain
Deep learning
Machine Learning

Disrupted functional connectome in antisocial personality disorder

Jiang, W., Shi, F., Liao, J., Liu, H., Wang, T., Shen, C., Shen, H., Hu, D., Wang, W. & Shen, D. Aug 1 2017 In : Brain Imaging and Behavior. 11, 4, p. 1071-1084 14 p.

Research output: Research - peer-reviewArticle

Connectome
Antisocial Personality Disorder
Brain
Aptitude
Neuroimaging
Topography
Image analysis
Emotions
Learning

Feature fusion via hierarchical supervised local CCA for diagnosis of autism spectrum disorder

Zhao, F., Qiao, L., Shi, F., Yap, P. T. & Shen, D. Aug 1 2017 In : Brain Imaging and Behavior. 11, 4, p. 1050-1060 11 p.

Research output: Research - peer-reviewArticle

Autism Spectrum Disorder
Brain
Parietal Lobe
Putamen
Prefrontal Cortex

Image mosaicking using SURF features of line segments

Yang, Z., Shen, D. & Yap, P. T. Mar 1 2017 In : PLoS ONE. 12, 3, e0173627

Research output: Research - peer-reviewArticle

methodology
Lighting
lighting
sampling

Joint prediction of longitudinal development of cortical surfaces and white matter fibers from neonatal MRI

Rekik, I., Li, G., Yap, P. T., Chen, G., Lin, W. & Shen, D. May 15 2017 In : NeuroImage. 152, p. 411-424 14 p.

Research output: Research - peer-reviewArticle

Atlases
Joints
White Matter
Brain
Brain Diseases
2 Citations

Kernel-based Joint Feature Selection and Max-Margin Classification for Early Diagnosis of Parkinson's Disease

Adeli, E., Wu, G., Saghafi, B., An, L., Shi, F. & Shen, D. Jan 25 2017 In : Scientific Reports. 7, 41069

Research output: Research - peer-reviewArticle

Feature extraction
Neurodegenerative diseases
Neuroimaging
Linear regression
Magnetic resonance imaging
1 Citations

MRI-based prostate cancer detection with high-level representation and hierarchical classification

Zhu, Y., Wang, L., Liu, M., Qian, C., Yousuf, A., Oto, A. & Shen, D. Mar 1 2017 In : Medical physics. 44, 3, p. 1028-1039 12 p.

Research output: Research - peer-reviewArticle

Prostatic Neoplasms
Learning
Neoplasms
1 Citations

Multi-Domain Transfer Learning for Early Diagnosis of Alzheimer’s Disease

Cheng, B., Liu, M., Shen, D., Li, Z., Zhang, D. & the Alzheimer’s Disease Neuroimaging Initiative Apr 1 2017 In : Neuroinformatics. 15, 2, p. 115-132 18 p.

Research output: Research - peer-reviewArticle

Early Diagnosis
Alzheimer Disease
Transfer (Psychology)
Learning
Neuroimaging
4 Citations

Multi-task diagnosis for autism spectrum disorders using multi-modality features: A multi-center study

Wang, J., Wang, Q., Peng, J., Nie, D., Zhao, F., Kim, M., Zhang, H., Wee, C. Y., Wang, S. & Shen, D. Jun 1 2017 In : Human Brain Mapping. 38, 6, p. 3081-3097 17 p.

Research output: Research - peer-reviewArticle

Autism Spectrum Disorder
Interpersonal Relations
Cognition
Language
Databases

Progressive multi-atlas label fusion by dictionary evolution

Song, Y., Wu, G., Bahrami, K., Sun, Q. & Shen, D. Feb 1 2017 In : Medical Image Analysis. 36, p. 162-171 10 p.

Research output: Research - peer-reviewArticle

Glossaries
Labels
Fusion reactions
Atlases
Labeling
2 Citations

Reduced white matter integrity in antisocial personality disorder: A diffusion tensor imaging study

Jiang, W., Shi, F., Liu, H., Li, G., Ding, Z., Shen, H., Shen, C., Lee, S. W., Hu, D., Wang, W. & Shen, D. Feb 22 2017 In : Scientific Reports. 7, 43002

Research output: Research - peer-reviewArticle

Antisocial Personality Disorder
Diffusion Tensor Imaging
White Matter
Anisotropy
Impulsive Behavior

Robust multi-atlas label propagation by deep sparse representation

Zu, C., Wang, Z., Zhang, D., Liang, P., Shi, Y., Shen, D. & Wu, G. Mar 1 2017 In : Pattern Recognition. 63, p. 511-517 7 p.

Research output: Research - peer-reviewArticle

Labels
Glossaries
Fusion reactions
Medical imaging
Labeling
1 Citations

Semisupervised Tripled Dictionary Learning for Standard-Dose PET Image Prediction Using Low-Dose PET and Multimodal MRI

Wang, Y., Ma, G., An, L., Shi, F., Zhang, P., Lalush, D. S., Wu, X., Pu, Y., Zhou, J. & Shen, D. Mar 1 2017 In : IEEE Transactions on Biomedical Engineering. 64, 3, p. 569-579 11 p., 7469380

Research output: Research - peer-reviewArticle

Positron emission tomography
Magnetic resonance
Glossaries
Imaging techniques
Image quality
1 Citations

Spatio-angular consistent construction of neonatal diffusion MRI atlases

Saghafi, B., Kim, J., Chen, G., Shi, F., Lin, W., Yap, P. T. & Shen, D. Jun 1 2017 In : Human Brain Mapping. 38, 6, p. 3175-3189 15 p.

Research output: Research - peer-reviewArticle

Diffusion Magnetic Resonance Imaging
Atlases
Brain
Direction compound
Anisotropy
4 Citations

Temporally constrained group sparse learning for longitudinal data analysis in Alzheimer's disease

Jie, B., Liu, M., Liu, J., Zhang, D. & Shen, D. Jan 1 2017 In : IEEE Transactions on Biomedical Engineering. 64, 1, p. 238-249 12 p., 7452361

Research output: Research - peer-reviewArticle

Brain
Imaging techniques
Biomarkers
Linear regression
7 Citations

View-aligned hypergraph learning for Alzheimer's disease diagnosis with incomplete multi-modality data

Liu, M., Zhang, J., Yap, P. T. & Shen, D. Feb 1 2017 In : Medical Image Analysis. 36, p. 123-134 12 p.

Research output: Research - peer-reviewArticle

Alzheimer Disease
Learning
Cognitive Dysfunction
Magnetic resonance imaging
Labels
2016
3 Citations

3D deep learning for multi-modal imaging-guided survival time prediction of brain tumor patients

Nie, D., Zhang, H., Adeli, E., Liu, L. & Shen, D. 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9901 LNCS, p. 212-220 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9901 LNCS)

Research output: ResearchConference contribution

Brain Tumor
Magnetic Resonance Image
Functional Magnetic Resonance Imaging
Survival Time
Imaging

7T-guided learning framework for improving the segmentation of 3T MR images

Bahrami, K., Rekik, I., Shi, F., Gao, Y. & Shen, D. 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9901 LNCS, p. 572-580 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9901 LNCS)

Research output: ResearchConference contribution

Segmentation
Framework
Learning
Magnetic resonance imaging
Scanner
5 Citations

Abnormal changes of brain cortical anatomy and the association with plasma MicroRNA107 level in amnestic mild cognitive impairment

Wang, T., Shi, F., Jin, Y., Jiang, W., Shen, D. & Xiao, S. 2016 In : Frontiers in Aging Neuroscience. 8, MAY, 112

Research output: Research - peer-reviewArticle

Anatomy
Brain
Cognitive Dysfunction
Language
Messenger RNA

Accelerating global tractography using parallel Markov chain Monte Carlo

Wu, H., Chen, G., Yang, Z., Shen, D. & Yap, P. T. 2016 Computational Diffusion MRI - MICCAI Workshop, 2015. Springer Heidelberg, Vol. none, p. 121-130 10 p. (Mathematics and Visualization; vol. none)

Research output: ResearchConference contribution

Markov Chain Monte Carlo
Fiber
Markov processes
Fibers
Observation
13 Citations

Accurate Segmentation of CT Male Pelvic Organs via Regression-Based Deformable Models and Multi-Task Random Forests

Gao, Y., Shao, Y., Lian, J., Wang, A. Z., Chen, R. C. & Shen, D. Jun 1 2016 In : IEEE Transactions on Medical Imaging. 35, 6, p. 1532-1543 12 p., 7384757

Research output: Research - peer-reviewArticle

Forests
Prostatic Neoplasms
Radiotherapy
Radiation
Computerized tomography

A dynamic tree-based registration could handle possible large deformations among MR brain images

Zhang, P., Wu, G., Gao, Y., Yap, P. T. & Shen, D. Sep 1 2016 In : Computerized Medical Imaging and Graphics. 52, p. 1-7 7 p.

Research output: Research - peer-reviewArticle

Atlases
Brain
Image registration
Labels
Anatomy
1 Citations

A hybrid multishape learning framework for longitudinal prediction of cortical surfaces and fiber tracts using neonatal data

Rekik, I., Li, G., Yap, P. T., Chen, G., Lin, W. & Shen, D. 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9900 LNCS, p. 210-218 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS)

Research output: ResearchConference contribution

Hybrid Learning
Fiber
Prediction
Framework
Fibers
2 Citations

A learning-based CT prostate segmentation method via joint transductive feature selection and regression

Shi, Y., Gao, Y., Liao, S., Zhang, D., Gao, Y. & Shen, D. Jan 15 2016 In : Neurocomputing. 173, p. 317-331 15 p.

Research output: Research - peer-reviewArticle

Feature extraction
Labels
Specifications
Prostate
Joints
2 Citations

Angular resolution enhancement of diffusion MRI data using inter-subject information transfer

Chen, G., Zhang, P., Li, K., Wee, C. Y., Wu, Y., Shen, D. & Yap, P. T. Jan 1 2016 Computational Diffusion MRI - MICCAI Workshop, 2015. Springer Heidelberg, Vol. none, p. 145-157 13 p. (Mathematics and Visualization; vol. none)

Research output: ResearchConference contribution

Resolution Enhancement
Information Transfer
Distribution Function
Magnetic resonance imaging
Distribution functions
1 Citations

Automated quantification of cerebral edema following hemispheric infarction: Application of a machine-learning algorithm to evaluate CSF shifts on serial head CTs

Chen, Y., Dhar, R., Heitsch, L., Ford, A., Fernandez-Cadenas, I., Carrera, C., Montaner, J., Lin, W., Shen, D., An, H. & Lee, J. M. Jan 1 2016 In : NeuroImage: Clinical. 12, p. 673-680 8 p.

Research output: Research - peer-reviewArticle

Fluid Shifts
Brain Edema
Infarction
Cerebrospinal Fluid
Head
1 Citations

Automated segmentation of CBCT image with prior-guided sequential random forest

Wang, L., Gao, Y., Shi, F., Li, G., Chen, K. C., Tang, Z., Xia, J. J. & Shen, D. 2016 Medical Computer Vision: Algorithms for Big Data - International Workshop, MCV 2015 and Held in Conjunction with MICCAI 2015, Revised Selected Papers. Springer Verlag, Vol. 9601, p. 72-82 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9601)

Research output: ResearchConference contribution

Random Forest
Segmentation
Classifier
Classifiers
Majority Voting
2 Citations

Automated segmentation of dental CBCT image with prior-guided sequential random forests

Wang, L., Gao, Y., Shi, F., Li, G., Chen, K. C., Tang, Z., Xia, J. J. & Shen, D. Jan 1 2016 In : Medical Physics. 43, 1, p. 336-346 11 p.

Research output: Research - peer-reviewArticle

Cone-Beam Computed Tomography
Tooth
Forests
Maxilla
Mandible
5 Citations

Automatic Craniomaxillofacial Landmark Digitization via Segmentation-Guided Partially-Joint Regression Forest Model and Multiscale Statistical Features

Zhang, J., Gao, Y., Wang, L., Tang, Z., Xia, J. J. & Shen, D. Sep 1 2016 In : IEEE Transactions on Biomedical Engineering. 63, 9, p. 1820-1829 10 p., 7336501

Research output: Research - peer-reviewArticle

Analog to digital conversion
Tomography
Cones
Vector quantization
Image segmentation

Automatic cystocele severity grading in ultrasound by spatio-temporal regression

Ni, D., Ji, X., Gao, Y., Cheng, J. Z., Wang, H., Qin, J., Lei, B., Wang, T., Wu, G. & Shen, D. Jan 1 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9901 LNCS, p. 247-255 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9901 LNCS)

Research output: ResearchConference contribution

Grading
Ultrasound
Regression
Ultrasonics
Descent
1 Citations

Automatic hippocampal subfield segmentation from 3T multi-modality images

Wu, Z., Gao, Y., Shi, F., Jewells, V. & Shen, D. 2016 Machine Learning in Medical Imaging - 7th International Workshop, MLMI 2016 held in conjunction with MICCAI 2016, Proceedings. Springer Verlag, Vol. 10019 LNCS, p. 229-236 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10019 LNCS)

Research output: ResearchConference contribution

Multimodality
Subfield
Segmentation
Magnetic resonance imaging
Functional Magnetic Resonance Imaging
10 Citations

Automatic labeling of MR brain images by hierarchical learning of atlas forests

Zhang, L., Wang, Q., Gao, Y., Wu, G. & Shen, D. Mar 1 2016 In : Medical Physics. 43, 3, 023103

Research output: Research - peer-reviewArticle

Atlases
Learning
Brain
Forests
Neuroimaging

Automatic segmentation of hippocampus for longitudinal infant brain MR image sequence by spatial-temporal hypergraph learning

Guo, Y., Dong, P., Hao, S., Wang, L., Wu, G. & Shen, D. 2016 Patch-Based Techniques in Medical Imaging - 2nd International Workshop, Patch-MI 2016 held in conjunction with MICCAI 2016, Proceedings. Springer Verlag, Vol. 9993 LNCS, p. 1-8 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9993 LNCS)

Research output: ResearchConference contribution

Hippocampus
Magnetic Resonance Image
Image Sequence
Hypergraph
Segmentation

Biomechanical Analysis of Normal Brain Development during the First Year of Life Using Finite Strain Theory

Kim, J. C., Wang, L., Shen, D. & Lin, W. Dec 2 2016 In : Scientific Reports. 6, 37666

Research output: Research - peer-reviewArticle

Brain
Growth
Temporal Lobe
Occipital Lobe
Lateral Ventricles
6 Citations

Canonical feature selection for joint regression and multi-class identification in Alzheimer’s disease diagnosis

Zhu, X., Suk, H. I., Lee, S. W. & Shen, D. Sep 1 2016 In : Brain Imaging and Behavior. 10, 3, p. 818-828 11 p.

Research output: Research - peer-reviewArticle

Alzheimer Disease
Joints
Brain Diseases
Neuroimaging
Positron-Emission Tomography
2 Citations

Collaborative multi-view denoising

Zhang, L., Wang, S., Zhang, X., Wang, Y., Li, B., Shen, D. & Ji, S. Aug 13 2016 KDD 2016 - Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, Vol. 13-17-August-2016, p. 2045-2054 10 p.

Research output: ResearchConference contribution

Information retrieval
Semantics

Combination of grey matter and white matter features for early prediction of posttraumatic stress disorder

Wang, S., Hu, H., Su, S., Liu, L., Wang, Z., Wang, Q. & Shen, D. 2016 Intelligent Data Engineering and Automated Learning - 17th International Conference, IDEAL 2016, Proceedings. Springer Verlag, Vol. 9937 LNCS, p. 560-567 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9937 LNCS)

Research output: ResearchConference contribution

Disorder
Prediction
Brain
Region of Interest
Labeling

Composite large margin classifiers with latent subclasses for heterogeneous biomedical data

Chen, G., Liu, Y., Shen, D. & Kosorok, M. R. Apr 1 2016 In : Statistical Analysis and Data Mining. 9, 2, p. 75-88 14 p.

Research output: Research - peer-reviewArticle

Margin
Classifier
Composite
Classifiers
Composite materials
35 Citations

Computer-Aided Diagnosis with Deep Learning Architecture: Applications to Breast Lesions in US Images and Pulmonary Nodules in CT Scans

Cheng, J. Z., Ni, D., Chou, Y. H., Qin, J., Tiu, C. M., Chang, Y. C., Huang, C. S., Shen, D. & Chen, C. M. Apr 15 2016 In : Scientific Reports. 6, 24454

Research output: Research - peer-reviewArticle

Breast
Learning
Lung
Noise
Differential Diagnosis
1 Citations

Consistent multi-atlas hippocampus segmentation for longitudinal MR brain images with temporal sparse representation

Wang, L., Guo, Y., Cao, X., Wu, G. & Shen, D. Jan 1 2016 Patch-Based Techniques in Medical Imaging - 2nd International Workshop, Patch-MI 2016 held in conjunction with MICCAI 2016, Proceedings. Springer Verlag, Vol. 9993 LNCS, p. 34-42 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9993 LNCS)

Research output: ResearchConference contribution

Hippocampus
Sparse Representation
Atlas
Segmentation
Brain
4 Citations

Consistent Spatial-Temporal Longitudinal Atlas Construction for Developing Infant Brains

Zhang, Y., Shi, F., Wu, G., Wang, L., Yap, P. T. & Shen, D. Dec 1 2016 In : IEEE Transactions on Medical Imaging. 35, 12, p. 2568-2577 10 p., 7505972

Research output: Research - peer-reviewArticle

Atlases
Brain
Tissue