Find Research Outputs

Search concepts
Selected Filters
2018

3D conditional generative adversarial networks for high-quality PET image estimation at low dose

Wang, Y., Yu, B., Wang, L., Zu, C., Lalush, D. S., Lin, W., Wu, X., Zhou, J., Shen, D. & Zhou, L. Jul 1 2018 In : NeuroImage. 174, p. 550-562 13 p.

Research output: Contribution to journalArticle

Positron-Emission Tomography
Biochemical Phenomena
Radioactive Tracers
Physiological Phenomena
Benchmarking

3-D Fully Convolutional Networks for Multimodal Isointense Infant Brain Image Segmentation

Nie, D., Wang, L., Adeli, E., Lao, C., Lin, W. & Shen, D. Feb 8 2018 (Accepted/In press) In : IEEE Transactions on Cybernetics.

Research output: Contribution to journalArticle

Brain mapping
Medical imaging
Network architecture
Convolution
Image segmentation

A computational method for longitudinal mapping of orientation-specific expansion of cortical surface area in infants

Xia, J., Zhang, C., Wang, F., Meng, Y., Wu, Z., Wang, L., Lin, W., Shen, D. & Li, G. May 23 2018 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April, p. 683-686 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computational methods
Growth
Direction compound

A Generative Model for OCT Retinal Layer Segmentation by Groupwise Curve Alignment

Duan, W., Zheng, Y., Ding, Y., Hou, S., Tang, Y., Xu, Y., Qin, M., Wu, J., Shen, D. & Bi, H. Apr 16 2018 In : IEEE Access. 6, p. 25130-25141 12 p.

Research output: Contribution to journalArticle

Optical tomography
Thickness measurement
Personnel

Anatomical Landmark based Deep Feature Representation for MR Images in Brain Disease Diagnosis

Liu, M., Zhang, J., Nie, D., Yap, P. T. & Shen, D. Jan 9 2018 (Accepted/In press) In : IEEE Journal of Biomedical and Health Informatics.

Research output: Contribution to journalArticle

Magnetic levitation vehicles
Neurodegenerative diseases
Image Enhancement
Neuroimaging
Computer aided diagnosis

Anatomy-guided joint tissue segmentation and topological correction for 6-month infant brain MRI with risk of autism

Wang, L., Li, G., Adeli, E., Liu, M., Wu, Z., Meng, Y., Lin, W. & Shen, D. Jun 1 2018 In : Human Brain Mapping. 39, 6, p. 2609-2623 15 p.

Research output: Contribution to journalArticle

Autistic Disorder
Anatomy
Joints
Brain
Biomarkers

Brain-wide Genome-wide Association Study for Alzheimer's Disease via Joint Projection Learning and Sparse Regression Model

Zhou, T., Thung, K. H., Liu, M. & Shen, D. Apr 6 2018 (Accepted/In press) In : IEEE Transactions on Biomedical Engineering.

Research output: Contribution to journalArticle

Brain
Genes
Imaging techniques
Labels
Neuroimaging

Cognitive Assessment Prediction in Alzheimer’s Disease by Multi-Layer Multi-Target Regression

Wang, X., Zhen, X., Li, Q., Shen, D. & Huang, H. May 25 2018 (Accepted/In press) In : Neuroinformatics. p. 1-10 10 p.

Research output: Contribution to journalArticle

Biomarkers
Alzheimer Disease
Learning
Neuroimaging
Glossaries

Construction of spatiotemporal infant cortical surface atlas of rhesus macaque

Wang, F., Lian, C., Xia, J., Wu, Z., Duan, D., Wang, L., Shen, D. & Li, G. May 23 2018 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April, p. 704-707 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Macaca mulatta
Brain
Macaca
Human Development

Construction of spatiotemporal neonatal cortical surface atlases using a large-scale dataset

Wu, Z., Li, G., Wang, L., Lin, W., Gilmore, J. H. & Shen, D. May 23 2018 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April, p. 1056-1059 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Neuroimaging
Glossaries
Datasets
Population

Data-driven graph construction and graph learning: A review

Qiao, L., Zhang, L., Chen, S. & Shen, D. Jan 1 2018 (Accepted/In press) In : Neurocomputing.

Research output: Contribution to journalArticle

Learning
Learning algorithms
Graph theory
Supervised learning
Learning systems
1 Citations

Deep embedding convolutional neural network for synthesizing CT image from T1-Weighted MR image

Xiang, L., Wang, Q., Nie, D., Zhang, L., Jin, X., Qiao, Y. & Shen, D. Jul 1 2018 In : Medical Image Analysis. 47, p. 31-44 14 p.

Research output: Contribution to journalArticle

Magnetic resonance
Tomography
Magnetic Resonance Spectroscopy
Neural networks
Neuroimaging

Estimation of shape and growth brain network atlases for connectomic brain mapping in developing infants

Rekik, I., Li, G., Lin, W. & Shen, D. May 23 2018 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April, p. 985-989 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Connectome
Brain mapping
Brain Mapping
Atlases
Brain

Exploring diagnosis and imaging biomarkers of Parkinson's disease via iterative canonical correlation analysis based feature selection

Liu, L., Wang, Q., Adeli, E., Zhang, L., Zhang, H. & Shen, D. Jul 1 2018 In : Computerized Medical Imaging and Graphics. 67, p. 21-29 9 p.

Research output: Contribution to journalArticle

Biomarkers
Parkinson Disease
Feature extraction
Imaging techniques
Brain

Fetal cortical parcellation based on growth patterns

Xia, J., Zhang, C., Wang, F., Benkarim, O. M., Sanroma, G., Piella, G., Balleste, M. A. G., Hahner, N., Eixarch, E., Shen, D. & Li, G. May 23 2018 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April, p. 696-699 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Growth
Fetus
Microstructure
Brain
Trajectories

Functional MRI registration with tissue-specific patch-based functional correlation tensors

Zhou, Y., Zhang, H., Zhang, L., Cao, X., Yang, R., Feng, Q., Yap, P. T. & Shen, D. Jun 1 2018 In : Human Brain Mapping. 39, 6, p. 2303-2316 14 p.

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Brain
Population
Gray Matter
White Matter

Genotype-phenotype association study via new multi-task learning model

Huo, Z., Shen, D. & Huang, H. Jan 1 2018 PACIFIC SYMPOSIUM ON BIOCOMPUTING 2018. 212669 ed. World Scientific Publishing Co. Pte Ltd, p. 353-364 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nucleotides
Polymorphism
Imaging techniques
Regression analysis
Brain
1 Citations

Hierarchical Vertex Regression-Based Segmentation of Head and Neck CT Images for Radiotherapy Planning

Wang, Z., Wei, L., Wang, L., Gao, Y., Chen, W. & Shen, D. Feb 1 2018 In : IEEE Transactions on Image Processing. 27, 2, p. 923-937 15 p., 8091292

Research output: Contribution to journalArticle

Medical imaging
Radiotherapy
Image segmentation
Sensitivity analysis
Learning systems

Infant brain development prediction with latent partial multi-view representation learning

Zhang, C., Adelv, E., Wu, Z., Li, G., Lin, W. & Shen, D. May 23 2018 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April, p. 1048-1051 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Child Development
Brain
Learning
Cerebral Cortex
Aptitude

Integration of temporal and spatial properties of dynamic connectivity networks for automatic diagnosis of brain disease

Jie, B., Liu, M. & Shen, D. Jul 1 2018 In : Medical Image Analysis. 47, p. 81-94 14 p.

Research output: Contribution to journalArticle

Brain Diseases
Brain
Magnetic Resonance Imaging
Learning
Neuroimaging

Integrative radiomics expression predicts molecular subtypes of primary clear cell renal cell carcinoma

Yin, Q., Hung, S. C., Rathmell, W. K., Shen, L., Wang, L., Lin, W., Fielding, J. R., Khandani, A. H., Woods, M. E., Milowsky, M. I., Brooks, S. A., Wallen, E. M. & Shen, D. Jan 1 2018 (Accepted/In press) In : Clinical Radiology.

Research output: Contribution to journalArticle

Renal Cell Carcinoma
Discriminant Analysis
Least-Squares Analysis
Positron-Emission Tomography
Magnetic Resonance Imaging
2 Citations

Interleaved 3D-CNNs for joint segmentation of small-volume structures in head and neck CT images

Ren, X., Xiang, L., Nie, D., Shao, Y., Zhang, H., Shen, D. & Wang, Q. May 1 2018 In : Medical physics. 45, 5, p. 2063-2075 13 p.

Research output: Contribution to journalArticle

Neck
Joints
Head
Optic Chiasm
Optic Nerve

Joint representation of consistent structural and functional profiles for identification of common cortical landmarks

Zhang, S., Zhao, Y., Jiang, X., Shen, D. & Liu, T. Jun 1 2018 In : Brain Imaging and Behavior. 12, 3, p. 728-742 15 p.

Research output: Contribution to journalArticle

Joints
Magnetic Resonance Imaging
Brain
Connectome
Brain Mapping
7 Citations

Landmark-based deep multi-instance learning for brain disease diagnosis

Liu, M., Zhang, J., Adeli, E. & Shen, D. Jan 1 2018 In : Medical Image Analysis. 43, p. 157-168 12 p.

Research output: Contribution to journalArticle

Learning non-linear patch embeddings with neural networks for label fusion

for the Alzheimer's Disease Neuroimaging Initiative Feb 1 2018 In : Medical Image Analysis. 44, p. 143-155 13 p.

Research output: Contribution to journalArticle

Image Enhancement
Image enhancement
Atlases
Magnetic resonance imaging
Labels
1 Citations

Longitudinally Guided Super-Resolution of Neonatal Brain Magnetic Resonance Images

Zhang, Y., Shi, F., Cheng, J., Wang, L., Yap, P. T. & Shen, D. Jan 8 2018 (Accepted/In press) In : IEEE Transactions on Cybernetics.

Research output: Contribution to journalArticle

Nonlinear filtering
Pediatrics
Optical resolving power
Magnetism
Magnetic resonance

Medical Image Synthesis with Deep Convolutional Adversarial Networks

Nie, D., Trullo, R., Lian, J., Wang, L., Petitjean, C., Ruan, S., Wang, Q. & Shen, D. Mar 8 2018 (Accepted/In press) In : IEEE Transactions on Biomedical Engineering.

Research output: Contribution to journalArticle

Magnetic resonance imaging
Medical imaging
Dosimetry
Imaging techniques
Deep learning

Multi-Atlas Segmentation of MR Tumor Brain Images Using Low-Rank Based Image Recovery

Tang, Z., Ahmad, S., Yap, P. T. & Shen, D. Apr 6 2018 (Accepted/In press) In : IEEE Transactions on Medical Imaging.

Research output: Contribution to journalArticle

Atlases
Brain Neoplasms
Tumors
Brain
Recovery

Multi-channel multi-scale fully convolutional network for 3D perivascular spaces segmentation in 7T MR images

Lian, C., Zhang, J., Liu, M., Zong, X., Hung, S. C., Lin, W. & Shen, D. May 1 2018 In : Medical Image Analysis. 46, p. 106-117 12 p.

Research output: Contribution to journalArticle

Image Enhancement
Image enhancement
Magnetic resonance
Convolution
Magnetic resonance imaging

Multi-label Nonlinear Matrix Completion with Transductive Multi-task Feature Selection for Joint MGMT and IDH1 Status Prediction of Patient with High-Grade Gliomas

Chen, L., Zhang, H., Lu, J., Thung, K., Aibaidula, A., Liu, L., Chen, S., Jin, L., Wu, J., Wang, Q., Zhou, L. & Shen, D. Feb 16 2018 (Accepted/In press) In : IEEE Transactions on Medical Imaging.

Research output: Contribution to journalArticle

Connectome
Brain mapping
Neuroimaging
Brain Mapping
Molecular imaging

Multi-task prediction of infant cognitive scores from longitudinal incomplete neuroimaging data

Adeli, E., Meng, Y., Li, G., Lin, W. & Shen, D. Jan 1 2018 (Accepted/In press) In : NeuroImage.

Research output: Contribution to journalArticle

Neuroimaging
Brain
Child Development
Longitudinal Studies
Research

Multi-View Missing Data Completion

Zhang, L., Zhao, Y., Zhu, Z., Shen, D. & Ji, S. Jul 1 2018 In : IEEE Transactions on Knowledge and Data Engineering. 30, 7, p. 1296-1309 14 p.

Research output: Contribution to journalArticle

Normal distribution
Semantics
Experiments

Polyp detection during colonoscopy using a regression-based convolutional neural network with a tracker

Zhang, R., Zheng, Y., Poon, C. C. Y., Shen, D. & Lau, J. Y. W. Nov 1 2018 In : Pattern Recognition. 83, p. 209-219 11 p.

Research output: Contribution to journalArticle

Pipelines
Neural networks
Convolution
Refining
Mathematical operators
2 Citations

Radiation-induced brain structural and functional abnormalities in presymptomatic phase and outcome prediction

Ding, Z., Zhang, H., Lv, X. F., Xie, F., Liu, L., Qiu, S., Li, L. & Shen, D. Jan 1 2018 In : Human Brain Mapping. 39, 1, p. 407-427 21 p.

Research output: Contribution to journalArticle

Radiation Dose-Response Relationship
Radiotherapy Dosage
Multimodal Imaging
Nasopharyngeal Neoplasms
Biological Models

Region-Adaptive Deformable Registration of CT/MRI Pelvic Images via Learning-Based Image Synthesis

Cao, X., Yang, J., Gao, Y., Wang, Q. & Shen, DI. Jul 1 2018 In : IEEE Transactions on Image Processing. 27, 7, p. 3500-3512 13 p.

Research output: Contribution to journalArticle

Magnetic resonance
Tomography
Imaging techniques
Radiotherapy
Image registration

Robust brain ROI segmentation by deformation regression and deformable shape model

Wu, Z., Guo, Y., Park, S. H., Gao, Y., Dong, P., Lee, S. W. & Shen, D. Jan 1 2018 In : Medical Image Analysis. 43, p. 198-213 16 p.

Research output: Contribution to journalArticle

Brain mapping
Brain Mapping
Decision Trees
Decision trees
Computational efficiency

Robust multi-label transfer feature learning for early diagnosis of Alzheimer’s disease

Alzheimer’s disease neuroimaging initiative Mar 27 2018 (Accepted/In press) In : Brain Imaging and Behavior. p. 1-16 16 p.

Research output: Contribution to journalArticle

Early Diagnosis
Alzheimer Disease
Learning
Information Storage and Retrieval
Neuroimaging

Segmenting hippocampal subfields from 3T MRI with multi-modality images

Wu, Z., Gao, Y., Shi, F., Ma, G., Jewells, V. & Shen, D. Jan 1 2018 In : Medical Image Analysis. 43, p. 10-22 13 p.

Research output: Contribution to journalArticle

Decision Trees
Image resolution
Decision trees
Iterative methods
Magnetic resonance imaging

Semi-Supervised Discriminative Classification Robust to Sample-Outliers and Feature-Noises

Adeli, E., Thung, K. H., An, L., Wu, G., Shi, F., Wang, T. & Shen, D. Jan 16 2018 (Accepted/In press) In : IEEE Transactions on Pattern Analysis and Machine Intelligence.

Research output: Contribution to journalArticle

Neurodegenerative diseases
Neuroimaging
Biomedical Imaging
Least squares approximations
Computer aided diagnosis

Semi-supervised learning for pelvic MR image segmentation based on multi-task residual fully convolutional networks

Feng, Z., Nie, D., Wang, L. & Shen, D. May 23 2018 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April, p. 885-888 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Supervised learning
Magnetic resonance
Image segmentation
Magnetic Resonance Spectroscopy
Image-Guided Radiotherapy

Simultaneous estimation of low- and high-order functional connectivity for identifying mild cognitive impairment

Zhou, Y., Qiao, L., Li, W., Zhang, L. & Shen, D. Feb 6 2018 In : Frontiers in Neuroinformatics. 12, 3

Research output: Contribution to journalArticle

Normal distribution
Normal Distribution
Correlation methods
Biomarkers
Brain
1 Citations

Single- and Multiple-Shell Uniform Sampling Schemes for Diffusion MRI Using Spherical Codes

Cheng, J., Shen, D., Yap, P. T. & Basser, P. J. Jan 1 2018 In : IEEE Transactions on Medical Imaging. 37, 1, p. 185-199 15 p., 8049360

Research output: Contribution to journalArticle

Diffusion Magnetic Resonance Imaging
Constrained optimization
Integer programming
Nonlinear programming
Iterative methods

Sparse Multiview Task-Centralized Ensemble Learning for ASD Diagnosis Based on Age- and Sex-Related Functional Connectivity Patterns

Wang, J., Wang, Q., Zhang, H., Chen, J., Wang, S. & Shen, D. Jun 18 2018 (Accepted/In press) In : IEEE Transactions on Cybernetics.

Research output: Contribution to journalArticle

Sub-Network Kernels for Measuring Similarity of Brain Connectivity Networks in Disease Diagnosis

Jie, B., Liu, M., Zhang, D. & Shen, D. May 1 2018 In : IEEE Transactions on Image Processing. 27, 5, p. 2340-2353 14 p.

Research output: Contribution to journalArticle

Graphic methods
Neuroimaging
Graph theory
Magnetic resonance imaging
Brain
1 Citations

The UNC/UMN Baby Connectome Project (BCP): An overview of the study design and protocol development

Howell, B. R., Styner, M. A., Gao, W., Yap, P. T., Wang, L., Baluyot, K., Yacoub, E., Chen, G., Potts, T., Salzwedel, A., Li, G., Gilmore, J. H., Piven, J., Smith, J. K., Shen, D., Ugurbil, K., Zhu, H., Lin, W. & Elison, J. T. Jan 1 2018 (Accepted/In press) In : NeuroImage.

Research output: Contribution to journalArticle

Connectome
Brain
Neuroimaging
Research Personnel
Magnetic Resonance Imaging

Tumor tissue detection using blood-oxygen-level-dependent functional MRI based on independent component analysis

Huang, H., Lu, J., Wu, J., Ding, Z., Chen, S., Duan, L., Cui, J., Chen, F., Kang, D., Qi, L., Qiu, W., Lee, S. W., Qiu, S. J., Shen, D., Zang, Y. F. & Zhang, H. Dec 1 2018 In : Scientific Reports. 8, 1, 1223

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Oxygen
Neoplasms
Glioma
Perfusion
2017
1 Citations

4D infant cortical surface atlas construction using spherical patch-based sparse representation

Wu, Z., Li, G., Meng, Y., Wang, L., Lin, W. & Shen, D. Jan 1 2017 Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer Verlag, p. 57-65 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS)

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medical computing
Neuroimaging
Sparse Representation
Atlas
Medical Imaging

A Hierarchical Feature and Sample Selection Framework and Its Application for Alzheimer's Disease Diagnosis

An, L., Adeli, E., Liu, M., Zhang, J., Lee, S. W. & Shen, D. Mar 30 2017 In : Scientific Reports. 7, 45269

Research output: Contribution to journalArticle

Nucleotides
Polymorphism
Classifiers
Magnetic resonance
Imaging techniques
15 Citations

Alzheimer's disease diagnosis using landmark-based features from longitudinal structural MR images

Zhang, J., Liu, M., An, L., Gao, Y. & Shen, D. Nov 1 2017 In : IEEE Journal of Biomedical and Health Informatics. 21, 6, p. 1607-1616 10 p., 7929275

Research output: Contribution to journalArticle

Magnetic levitation vehicles
Neurodegenerative diseases
Neuroimaging
Tissue Engineering
Image segmentation
1 Citations

An automated method for identifying an independent component analysis-based language-related resting-state network in brain tumor subjects for surgical planning

Lu, J., Zhang, H., Hameed, N. U. F., Zhang, J., Yuan, S., Qiu, T., Shen, D. & Wu, J. Dec 1 2017 In : Scientific Reports. 7, 1, 13769

Research output: Contribution to journalArticle