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2017
2 Citations
Renal Cell Carcinoma
Vascular Endothelial Growth Factor A
Neoplasms
Angiogenesis Inhibitors
Neoplasm Metastasis
Topography
Image analysis
Emotions
Learning

Hybrid PET/MR: State-of-the-Art and Future Challenges

Lin, W., Hung, S. C., Lee, Y. Z. & Wong, T. Z. May 1 2017 In : Magnetic Resonance Imaging Clinics of North America. 25, 2, p. xv-xvii

Research output: Research - peer-reviewEditorial

Joint prediction of longitudinal development of cortical surfaces and white matter fibers from neonatal MRI

Rekik, I., Li, G., Yap, P. T., Chen, G., Lin, W. & Shen, D. May 15 2017 In : NeuroImage. 152, p. 411-424 14 p.

Research output: Research - peer-reviewArticle

Atlases
Joints
White Matter
Brain
Brain Diseases
2016
1 Citations

A hybrid multishape learning framework for longitudinal prediction of cortical surfaces and fiber tracts using neonatal data

Rekik, I., Li, G., Yap, P. T., Chen, G., Lin, W. & Shen, D. 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9900 LNCS, p. 210-218 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS)

Research output: ResearchConference contribution

Hybrid Learning
Fiber
Prediction
Framework
Fibers
6 Citations

Alternate metabolic programs define regional variation of relevant biological features in renal cell carcinoma progression

Brooks, S. A., Khandani, A. H., Fielding, J. R., Lin, W., Sills, T., Lee, Y., Arreola, A., Milowsky, M. I., Wallen, E. M., Woods, M. E., Smith, A. B., Nielsen, M. E., Parker, J. S., Lalush, D. S. & Rathmell, W. K. Jun 15 2016 In : Clinical Cancer Research. 22, 12, p. 2950-2959 10 p.

Research output: Research - peer-reviewArticle

Renal Cell Carcinoma
Neoplasms
Glucose
Pentose Phosphate Pathway
Genetic Heterogeneity
1 Citations

Automated quantification of cerebral edema following hemispheric infarction: Application of a machine-learning algorithm to evaluate CSF shifts on serial head CTs

Chen, Y., Dhar, R., Heitsch, L., Ford, A., Fernandez-Cadenas, I., Carrera, C., Montaner, J., Lin, W., Shen, D., An, H. & Lee, J. M. Jan 1 2016 In : NeuroImage: Clinical. 12, p. 673-680 8 p.

Research output: Research - peer-reviewArticle

Fluid Shifts
Brain Edema
Infarction
Cerebrospinal Fluid
Head

Biomechanical Analysis of Normal Brain Development during the First Year of Life Using Finite Strain Theory

Kim, J. C., Wang, L., Shen, D. & Lin, W. Dec 2 2016 In : Scientific Reports. 6, 37666

Research output: Research - peer-reviewArticle

Brain
Growth
Temporal Lobe
Occipital Lobe
Lateral Ventricles
5 Citations

Cortical thickness and surface area in neonates at high risk for schizophrenia

Li, G., Wang, L., Shi, F., Lyall, A. E., Ahn, M., Peng, Z., Zhu, H., Lin, W., Gilmore, J. H. & Shen, D. Jan 1 2016 In : Brain Structure and Function. 221, 1, p. 447-461 15 p.

Research output: Research - peer-reviewArticle

Schizophrenia
Occipital Lobe
Gyrus Cinguli
Broca Area
Auditory Cortex
1 Citations

Discovering cortical folding patterns in neonatal cortical surfaces using large-scale dataset

Meng, Y., Li, G., Wang, L., Lin, W., Gilmore, J. H. & Shen, D. 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9900 LNCS, p. 10-18 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS)

Research output: ResearchConference contribution

Folding
Brain
Neuroimaging
Similarity
Fusion reactions
1 Citations
Cerebrovascular Circulation
HIV
Therapeutics
Gray Matter
Magnetic Resonance Imaging
2 Citations

Learning-based subject-specific estimation of dynamic maps of cortical morphology at missing time points in longitudinal infant studies

Meng, Y., Li, G., Gao, Y., Lin, W. & Shen, D. Nov 1 2016 In : Human Brain Mapping. 37, 11, p. 4129-4147 19 p.

Research output: Research - peer-reviewArticle

Longitudinal Studies
Learning
Brain
Forests
Datasets
2 Citations

Longitudinal study of the emerging functional connectivity asymmetry of primary language regions during infancy

Emerson, R. W., Gao, W. & Lin, W. Oct 19 2016 In : Journal of Neuroscience. 36, 42, p. 10883-10892 10 p.

Research output: Research - peer-reviewArticle

Prefrontal Cortex
Longitudinal Studies
Language
Temporal Lobe
Parietal Lobe
2 Citations

Multidirectional and Topography-based Dynamic-scale Varifold Representations with Application to Matching Developing Cortical Surfaces

Rekik, I., Li, G., Lin, W. & Shen, D. Jul 15 2016 In : NeuroImage. 135, p. 152-162 11 p.

Research output: Research - peer-reviewArticle

Normal Distribution
Cerebral Cortex
Direction compound
6 Citations
Learning
Topography
Atlases
Trajectories
Neuroimaging
6 Citations

Predicting standard-dose PET image from low-dose PET and multimodal MR images using mapping-based sparse representation

Wang, Y., Zhang, P., An, L., Ma, G., Kang, J., Shi, F., Wu, X., Zhou, J., Lalush, D. S., Lin, W. & Shen, D. Jan 6 2016 In : Physics in Medicine and Biology. 61, 2, p. 791-812 22 p.

Research output: Research - peer-reviewArticle

Positron-Emission Tomography
Magnetic Resonance Spectroscopy
Benchmarking
Computer-Assisted Image Processing
Human Body

Reperfusion beyond 6 hours reduces infarct probability in moderately ischemic brain tissue

An, H., Ford, A. L., Eldeniz, C., Chen, Y., Vo, K. D., Zhu, H., Powers, W. J., Lin, W. & Lee, J. M. Jan 1 2016 In : Stroke. 47, 1, p. 99-105 7 p.

Research output: Research - peer-reviewArticle

Reperfusion
Brain
Perfusion
Stroke
Ischemia
3 Citations

Segmentation of perivascular spaces in 7 T MR image using auto-context model with orientation-normalized features

Park, S. H., Zong, X., Gao, Y., Lin, W. & Shen, D. Jul 1 2016 In : NeuroImage. 134, p. 223-235 13 p.

Research output: Research - peer-reviewArticle

Magnetic Resonance Spectroscopy
Brain
Learning
Direction compound
Lymphatic System

Segmentation of perivascular spaces using vascular features and structured random forest from 7T MR image

Zhang, J., Gao, Y., Park, S. H., Zong, X., Lin, W. & Shen, D. 2016 Machine Learning in Medical Imaging - 7th International Workshop, MLMI 2016 held in conjunction with MICCAI 2016, Proceedings. Springer Verlag, Vol. 10019 LNCS, p. 61-68 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10019 LNCS)

Research output: ResearchConference contribution

Random Forest
Segmentation
Entropy
Sampling
Background
3 Citations

STGP: Spatio-temporal Gaussian process models for longitudinal neuroimaging data

Hyun, J. W., Li, Y., Huang, C., Styner, M., Lin, W., Zhu, H. & for the Alzheimer's Disease Neuroimaging Initiative Jul 1 2016 In : NeuroImage. 134, p. 550-562 13 p.

Research output: Research - peer-reviewArticle

Neuroimaging
Brain
Spatial Analysis
Lateral Ventricles
Brain Diseases
1 Citations

Subject-specific estimation of missing cortical thickness maps in developing infant brains

Meng, Y., Li, G., Gao, Y., Gilmore, J. H., Lin, W. & Shen, D. 2016 Medical Computer Vision: Algorithms for Big Data - International Workshop, MCV 2015 and Held in Conjunction with MICCAI 2015, Revised Selected Papers. Springer Verlag, Vol. 9601, p. 83-92 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9601)

Research output: ResearchConference contribution

Brain
Regression
Estimate
Vertex of a graph
Neuroimaging
1 Citations

TOWERS: T-One with Enhanced Robustness and Speed

Eldeniz, C., Finsterbusch, J., Lin, W. & An, H. Jul 1 2016 In : Magnetic Resonance in Medicine. 76, 1, p. 118-126 9 p.

Research output: Research - peer-reviewArticle

Calibration
Brain Mapping
Gold
Artifacts
11 Citations

Visualization of perivascular spaces in the human brain at 7T: Sequence optimization and morphology characterization.

Zong, X., Park, S. H., Shen, D. & Lin, W. Jan 15 2016 In : NeuroImage. 125, p. 895-902 8 p.

Research output: Research - peer-reviewArticle

Noise
Brain
Brain Diseases
Healthy Volunteers
White Matter
2015
13 Citations

A critical proton MR spectroscopy marker of Alzheimer's disease early neurodegenerative change: Low hippocampal NAA/Cr ratio impacts APOE ε 4 Mexico City children and their parents

Calderón-Garcidueñas, L., Mora-Tiscareño, A., Melo-Sánchez, G., Rodríguez-Díaz, J., Torres-Jardón, R., Styner, M., Mukherjee, P. S., Lin, W. & Jewells, V. Oct 27 2015 In : Journal of Alzheimer's Disease. 48, 4, p. 1065-1075 11 p.

Research output: Research - peer-reviewArticle

Mexico
Protons
Alzheimer Disease
Magnetic Resonance Spectroscopy
Parents

A multi-level canonical correlation analysis scheme for standard-dose PET image estimation

An, L., Zhang, P., Adeli-Mosabbeb, E., Wang, Y., Ma, G., Shi, F., Lalush, D. S., Lin, W. & Shen, D. Jan 1 2015 Patch-Based Techniques in Medical Imaging - First st International Workshop, Patch-MI 2015 Held in Conjunction with MICCAI 2015, Revised Selected Papers. Springer Verlag, Vol. 9467, p. 1-9 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9467)

Research output: ResearchConference contribution

Positron Emission Tomography
Canonical Correlation Analysis
Dose
Standards
Positron emission tomography
3 Citations

A sparse reduced rank framework for group analysis of functional neuroimaging data

Ahn, M., Shen, H., Lin, W. & Zhu, H. Jan 1 2015 In : Statistica Sinica. 25, 1, p. 295-312 18 p.

Research output: Research - peer-reviewArticle

Reduced Rank
Neuroimaging
Framework
Connectivity
Disorder
16 Citations

Consistent anterior-posterior segregation of the insula during the first 2 years of life

Alcauter, S., Lin, W., Keith Smith, J., Gilmore, J. H. & Gao, W. Jan 1 2015 In : Cerebral Cortex. 25, 5, p. 1176-1187 12 p.

Research output: Research - peer-reviewArticle

Magnetic Resonance Imaging
14 Citations
Atlases
Brain
Magnetic resonance imaging
Datasets
Neuroimaging

Cortical surface-based construction of individual structural network with application to early brain development study

Meng, Y., Li, G., Lin, W., Gilmore, J. H. & Shen, D. 2015 Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015 - 18th International Conference, Proceedings. Springer Verlag, Vol. 9351, p. 560-568 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9351)

Research output: ResearchConference contribution

Brain
Patch
Vertex of a graph
Similarity
Magnetic Resonance Imaging
103 Citations

Deep convolutional neural networks for multi-modality isointense infant brain image segmentation

Zhang, W., Li, R., Deng, H., Wang, L., Lin, W., Ji, S. & Shen, D. Mar 1 2015 In : NeuroImage. 108, p. 214-224 11 p.

Research output: Research - peer-reviewArticle

Brain
White Matter
Gray Matter
Anisotropy
Cerebrospinal Fluid
14 Citations

Defining the Ischemic Penumbra Using Magnetic Resonance Oxygen Metabolic Index

An, H., Ford, A. L., Chen, Y., Zhu, H., Ponisio, R., Kumar, G., Shanechi, A. M., Khoury, N., Vo, K. D., Williams, J., Derdeyn, C. P., Diringer, M. N., Panagos, P., Powers, W. J., Lee, J. M. & Lin, W. Apr 20 2015 In : Stroke. 46, 4, p. 982-988 7 p.

Research output: Research - peer-reviewArticle

Magnetic Resonance Spectroscopy
Oxygen
Reperfusion
Stroke
Cerebrovascular Circulation
19 Citations

Development of human brain cortical network architecture during infancy

Gao, W., Alcauter, S., Smith, J. K., Gilmore, J. H. & Lin, W. Mar 1 2015 In : Brain structure & function. 220, 2, p. 1173-1186 14 p.

Research output: Research - peer-reviewArticle

Human Development
Brain
Newborn Infant
Growth
Sex Characteristics
8 Citations

Frequency of spontaneous BOLD signal shifts during infancy and correlates with cognitive performance

Alcauter, S., Lin, W., Smith, J. K., Goldman, B. D., Reznick, J. S., Gilmore, J. H. & Gao, W. Jan 1 2015 In : Developmental Cognitive Neuroscience. 12, p. 40-50 11 p.

Research output: Research - peer-reviewArticle

Brain
Magnetic Resonance Imaging
Power (Psychology)
33 Citations

Functional network development during the first year: Relative sequence and socioeconomic correlations

Gao, W., Alcauter, S., Elton, A., Hernandez-Castillo, C. R., Smith, J. K., Ramirez, J. & Lin, W. Sep 1 2015 In : Cerebral Cortex. 25, 9, p. 2919-2928 10 p.

Research output: Research - peer-reviewArticle

Social Class
Brain
Critical Period (Psychology)
Growth
Executive Function
3 Citations

Hierarchical and symmetric infant image registration by robust longitudinal-example-guided correspondence detection

Wu, Y., Wu, G., Wang, L., Munsell, B. C., Wang, Q., Lin, W., Feng, Q., Chen, W. & Shen, D. Jul 1 2015 In : Medical Physics. 42, 7, p. 4174-4189 16 p.

Research output: Research - peer-reviewArticle

Brain
Growth
Individuality
Parturition
4 Citations

High-Pressure Transvenous Perfusion of the Upper Extremity in Human Muscular Dystrophy: A Safety Study with 0.9% Saline

Fan, Z., Kocis, K., Valley, R., Howard, J. F., Chopra, M., Chen, Y., An, H., Lin, W., Muenzer, J. & Powers, W. Jan 1 2015 In : Human Gene Therapy. 26, 9, p. 614-621 8 p.

Research output: Research - peer-reviewArticle

Muscular Dystrophies
Upper Extremity
Extremities
Perfusion
Safety
8 Citations
Partial Epilepsy
Positron Emission Tomography Computed Tomography
Single-Photon Emission-Computed Tomography
Electroencephalography
Epilepsy

Isointense infant brain segmentation by stacked kernel canonical correlation analysis

Wang, L., Shi, F., Gao, Y., Li, G., Lin, W. & Shen, D. 2015 Patch-Based Techniques in Medical Imaging - First st International Workshop, Patch-MI 2015 Held in Conjunction with MICCAI 2015, Revised Selected Papers. Springer Verlag, Vol. 9467, p. 28-36 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9467)

Research output: ResearchConference contribution

Canonical Correlation Analysis
Segmentation
kernel
Brain
Tissue
63 Citations

LINKS: Learning-based multi-source IntegratioN frameworK for Segmentation of infant brain images

Wang, L., Gao, Y., Shi, F., Li, G., Gilmore, J. H., Lin, W. & Shen, D. Mar 1 2015 In : NeuroImage. 108, p. 160-172 13 p.

Research output: Research - peer-reviewArticle

Learning
Brain
White Matter
Gray Matter
Atlases

Parcellation of infant surface atlas using developmental trajectories of multidimensional cortical attributes

Li, G., Wang, L., Gilmore, J. H., Lin, W. & Shen, D. 2015 Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015 - 18th International Conference, Proceedings. Springer Verlag, Vol. 9351, p. 543-550 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9351)

Research output: ResearchConference contribution

Atlas
Attribute
Trajectory
Trajectories
Surface area
5 Citations

Predicting Alzheimer's disease using combined imaging-whole genome SNP data

Kong, D., Giovanello, K. S., Wang, Y., Lin, W., Lee, E., Fan, Y., Murali Doraiswamy, P. & Zhu, H. Jun 25 2015 In : Journal of Alzheimer's Disease. 46, 3, p. 695-702 8 p.

Research output: Research - peer-reviewArticle

Single Nucleotide Polymorphism
Alzheimer Disease
Genome
Neuroimaging
Cognitive Dysfunction
1 Citations

Predicting standard-dose PET image from low-dose PET and multimodal MR images using mapping-based sparse representation

Wang, Y., Zhang, P., An, L., Ma, G., Kang, J., Wu, X., Zhou, J., Lalush, D. S., Lin, W. & Shen, D. Jan 1 2015 Machine Learning in Medical Imaging - 6th International Workshop, MLMI 2015 Held in Conjunction with MICCAI 2015, Proceedings. Springer Verlag, Vol. 9352, p. 127-135 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9352)

Research output: ResearchConference contribution

Positron Emission Tomography
Magnetic Resonance Image
Sparse Representation
Dose
Standards

Prediction of infant MRI appearance and anatomical structure evolution using sparse patch-based metamorphosis learning framework

Rekik, I., Li, G., Wu, G., Lin, W. & Shen, D. 2015 Patch-Based Techniques in Medical Imaging - First st International Workshop, Patch-MI 2015 Held in Conjunction with MICCAI 2015, Revised Selected Papers. Springer Verlag, Vol. 9467, p. 197-204 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9467)

Research output: ResearchConference contribution

Magnetic Resonance Imaging
Patch
Prediction
Learning
Brain
2 Citations
Prediction
Learning
Framework
Baseline
Training
2 Citations

Prediction of standard-dose brain PET image by using MRI and low-dose brain [18F]FDG PET images

Kang, J., Gao, Y., Shi, F., Lalush, D. S., Lin, W. & Shen, D. Sep 1 2015 In : Medical Physics. 42, 9, p. 5301-5309 9 p.

Research output: Research - peer-reviewArticle

Positron-Emission Tomography
Magnetic Resonance Imaging
Brain
Brain Diseases
Diagnostic Imaging
19 Citations

Prenatal drug exposure affects neonatal brain functional connectivity

Salzwedel, A. P., Grewen, K. M., Vachet, C., Gerig, G., Lin, W. & Gao, W. Jan 1 2015 In : Journal of Neuroscience. 35, 14, p. 5860-5869 10 p.

Research output: Research - peer-reviewArticle

Cocaine
Brain
Pharmaceutical Preparations
Amygdala
Drug and Narcotic Control
12 Citations

Probabilistic air segmentation and sparse regression estimated pseudo CT for PET/MR attenuation correction

Chen, Y., Juttukonda, M., Su, Y., Benzinger, T., Rubin, B. G., Lee, Y. Z., Lin, W., Shen, D., Lalush, D. & An, H. Jan 1 2015 In : Radiology. 275, 2, p. 562-569 8 p.

Research output: Research - peer-reviewArticle

Positron-Emission Tomography
Magnetic Resonance Spectroscopy
Air
Atlases
Brain
2 Citations

Segmentation of infant hippocampus using common feature representations learned for multimodal longitudinal data

Guo, Y., Wu, G., Yap, P. T., Jewells, V., Lin, W. & Shen, D. 2015 Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015 - 18th International Conference, Proceedings. Springer Verlag, Vol. 9351, p. 63-71 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9351)

Research output: ResearchConference contribution

Hippocampus
Longitudinal Data
Segmentation
Brain
Modality
15 Citations
Parietal Lobe
Parturition
Growth
Occipital Lobe
Somatosensory Cortex
5 Citations

Spatiotemporal patterns of cortical fiber density in developing infants, and their relationship with cortical thickness

Li, G., Liu, T., Ni, D., Lin, W., Gilmore, J. H. & Shen, D. Dec 1 2015 In : Human Brain Mapping. 36, 12, p. 5183-5195 13 p.

Research output: Research - peer-reviewArticle

Brain
Parietal Lobe
Diffusion Tensor Imaging
Frontal Lobe
Temporal Lobe