Find Research Outputs

2018

A guide to illumina beadchip data analysis

Wu, M. C. & Kuan, P. F. Jan 1 2018 Methods in Molecular Biology. Humana Press Inc., p. 303-330 28 p. (Methods in Molecular Biology; vol. 1708)

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA Methylation
Quality Control
Genome
DNA Fingerprinting
Environmental Exposure

A high throughput, functional screen of human Body Mass Index GWAS loci using tissue-specific RNAi Drosophila melanogaster crosses

Baranski, T. J., Kraja, A. T., Fink, J. L., Feitosa, M., Lenzini, P. A., Borecki, I. B., Liu, C. T., Cupples, L. A., North, K. E. & Province, M. A. Apr 1 2018 In : PLoS genetics. 14, 4, e1007222

Research output: Contribution to journalArticle

Genome-Wide Association Study
RNA Interference
Drosophila melanogaster
Human Body
body mass
4 Citations

A High-Valent Metal-Oxo Species Produced by Photoinduced One-Electron, Two-Proton Transfer Reactivity

Hu, K., Sampaio, R. N., Marquard, S. L., Brennaman, M. K., Tamaki, Y., Meyer, T. J. & Meyer, G. J. Jan 2 2018 In : Inorganic Chemistry. 57, 1, p. 486-494 9 p.

Research output: Contribution to journalArticle

Traveling wave tubes
reactivity
catalysts
protons
metals
2 Citations

Airway mucosal host defense is key to genomic regulation of cystic fibrosis lung disease severity

Polineni, D., Dang, H., Gallins, P. J., Jones, L. C., Pace, R. G., Stonebraker, J. R., Commander, L. A., Krenicky, J. E., Zhou, Y. H., Corvol, H., Cutting, G. R., Drumm, M. L., Strug, L. J., Boyle, M. P., Durie, P. R., Chmiel, J. F., Zou, F., Wright, F. A., O’Neal, W. K. & Knowles, M. R. Jan 1 2018 In : American Journal of Respiratory and Critical Care Medicine. 197, 1, p. 79-93 15 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Transcriptome
Cystic Fibrosis
Lung Diseases
Epithelium

A label-fusion-aided convolutional neural network for isointense infant brain tissue segmentation

Li, T., Zhou, F., Zhu, Z., Shu, H. & Zhu, H. May 23 2018 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April, p. 692-695 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Labels
Brain
Fusion reactions
Tissue
Neural networks
1 Citations

A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure

The CHARGE Neurology Working Group Mar 1 2018 In : American journal of human genetics. 102, 3, p. 375-400 26 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Life Style
Smoking
Genome
Blood Pressure
1 Citations

Allele-specific SHAPE-MaP assessment of the effects of somatic variation and protein binding on mRNA structure

Lackey, L., Coria, A., Woods, C., McArthur, E. & Laederach, A. Apr 1 2018 In : RNA. 24, 4, p. 513-528 16 p.

Research output: Contribution to journalArticle

Protein Binding
Alleles
Messenger RNA
Mutation
RNA

A longitudinal analysis of resource mobilisation among forced and voluntary return migrants in Mexico

Hagan, J., Wassink, J. & Castro, B. Mar 27 2018 (Accepted/In press) In : Journal of Ethnic and Migration Studies. p. 1-20 20 p.

Research output: Contribution to journalArticle

mobilization
labor market
Mexico
migrant
deportation

Alterations in the oral microbiome in HIV-infected participants after antiretroviral therapy administration are influenced by immune status

Presti, R. M., Handley, S. A., Droit, L., Ghannoum, M., Jacobson, M., Shiboski, C. H., Webster-Cyriaque, J., Brown, T., Yin, M. T. & Overton, E. T. Jun 19 2018 In : AIDS. 32, 10, p. 1279-1287 9 p.

Research output: Contribution to journalArticle

Microbiota
CD4 Lymphocyte Count
HIV
T-Lymphocytes
Saliva

Altered stress hormone response following acute exercise during prostate cancer treatment

Hanson, E. D., Sakkal, S., Evans, W. S., Violet, J. A., Battaglini, C. L., McConell, G. K. & Hayes, A. Aug 1 2018 In : Scandinavian Journal of Medicine and Science in Sports. 28, 8, p. 1925-1933 9 p.

Research output: Contribution to journalArticle

Prostatic Neoplasms
Hormones
Exercise
Androgens
Hydrocortisone
1 Citations

Alzheimer's Association Dementia Care Practice Recommendations

Fazio, S., Pace, D., Maslow, K., Zimmerman, S. & Kallmyer, B. Jan 18 2018 In : Gerontologist. 58, p. S1-S9

Research output: Contribution to journalEditorial

Dementia

A marginalized two-part model with heterogeneous variance for semicontinuous data

Smith, V. A. & Preisser, J. S. Jan 1 2018 (Accepted/In press) In : Statistical methods in medical research.

Research output: Contribution to journalArticle

Veterans Health
Normal Distribution
Health Expenditures
Biomedical Research
Weight Loss

A mathematical model of the effects of resistance exercise-induced muscle hypertrophy on body composition

Torres, M., Trexler, E. T., Smith-Ryan, A. E. & Reynolds, A. Feb 1 2018 In : European Journal of Applied Physiology. 118, 2, p. 449-460 12 p.

Research output: Contribution to journalArticle

Body Composition
Hypertrophy
Weight Loss
Theoretical Models
Exercise

Ambulatory blood pressure monitoring and neurocognitive function in children with primary hypertension

Kupferman, J. C., Batisky, D. L., Samuels, J., Adams, H. R., Hooper, S. R., Wang, H. & Lande, M. B. Jun 12 2018 (Accepted/In press) In : Pediatric Nephrology. p. 1-7 7 p.

Research output: Contribution to journalArticle

Ambulatory Blood Pressure Monitoring
Blood Pressure
Hypertension
Odds Ratio
Ambulatory Monitoring

A measurement-based model for parallel real-time tasks

Agrawal, K. & Baruah, S. Jun 1 2018 30th Euromicro Conference on Real-Time Systems, ECRTS 2018. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, Vol. 106, 5

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Scheduling
Sleep

Amelioration of Muscle and Nerve Pathology in LAMA2 Muscular Dystrophy by AAV9-Mini-Agrin

Qiao, C., Dai, Y., Nikolova, V. D., Jin, Q., Li, J., Xiao, B., Li, J., Moy, S. S. & Xiao, X. Jun 15 2018 In : Molecular Therapy - Methods and Clinical Development. 9, p. 47-56 10 p.

Research output: Contribution to journalArticle

Agrin
Muscular Dystrophies
Therapeutic Uses
Pathology
Muscles

A membrane-associated, fluorogenic reporter for mammalian phospholipase C isozymes

Huang, W., Wang, X., Endo-Streeter, S., Barrett, M., Waybright, J., Wohlfeld, C., Hajicek, N., Harden, T. K., Sondek, J. & Zhang, Q. Jan 1 2018 In : Journal of Biological Chemistry. 293, 5, p. 1728-1735 8 p.

Research output: Contribution to journalArticle

Isoenzymes
Disease control
Mammals
Type C Phospholipases
Cell membranes
4 Citations

American Gastroenterological Association Institute Guideline on Initial Management of Acute Pancreatitis

American Gastroenterological Association Institute Clinical Guidelines Committee Mar 1 2018 In : Gastroenterology. 154, 4, p. 1096-1101 6 p.

Research output: Contribution to journalArticle

Pancreatitis
Guidelines
2 Citations

American Heart Association's Life Simple 7 and risk of atrial fibrillation in a population without known cardiovascular disease: The ARIC (Atherosclerosis risk in communities) study

Garg, P. K., O'Neal, W. T., Chen, L. Y., Loehr, L. R., Sotoodehnia, N., Soliman, E. Z. & Alonso, A. Apr 17 2018 In : Journal of the American Heart Association. 7, 8, e008424

Research output: Contribution to journalArticle

American Heart Association
Atrial Fibrillation
Atherosclerosis
Cardiovascular Diseases
Population
1 Citations

American heart association's Life's Simple 7 at middle age and prognosis after myocardial infarction in later life

Mok, Y., Sang, Y., Ballew, S. H., Rebholz, C. M., Rosamond, W. D., Heiss, G., Folsom, A. R., Coresh, J. & Matsushita, K. Feb 1 2018 In : Journal of the American Heart Association. 7, 4, e007658

Research output: Contribution to journalArticle

American Heart Association
Secondary Prevention
Myocardial Infarction
Confidence Intervals
Fasting

A method of immediate detection of objects with a near-zero apparent motion in series of CCD-frames

Savanevych, V. E., Khlamov, S. V., Vavilova, I. B., Briukhovetskyi, A. B., Pohorelov, A. V., Mkrtichian, D. E., Kudak, V. I., Pakuliak, L. K., Dikov, E. N., Melnik, R. G., Vlasenko, V. P. & Reichart, D. E. Jan 1 2018 In : Astronomy and Astrophysics. 609, A54

Research output: Contribution to journalArticle

C (programming language)
Asteroids
asteroids
Charge coupled devices
image processing

A minimal physiologically based pharmacokinetic model that predicts anti-PEG IgG-mediated clearance of PEGylated drugs in human and mouse

McSweeney, M. D., Wessler, T., Price, L. S. L., Ciociola, E. C., Herity, L. B., Piscitelli, J. A., Zamboni, W. C., Forest, M. G., Cao, Y. & Lai, S. K. Aug 28 2018 In : Journal of Controlled Release. 284, p. 171-178 8 p.

Research output: Contribution to journalArticle

Pharmacokinetics
Antibodies
Polyethylene glycols
Anti-Idiotypic Antibodies
Immunoglobulin G

A mouse model of peanut allergy induced by sensitization through the gastrointestinal tract

Orgel, K. & Kulis, M. Jan 1 2018 Methods in Molecular Biology. Humana Press Inc., p. 39-47 9 p. (Methods in Molecular Biology; vol. 1799)

Research output: Chapter in Book/Report/Conference proceedingChapter

Peanut Hypersensitivity
Gastrointestinal Tract
Anaphylaxis
Immunotherapy
Biomarkers

Amplified hearing device use in acute care settings for patients with hearing loss: A feasibility study

Kimball, A. R., Roscigno, C. I., Jenerette, C. M., Hughart, K. M., Jenkins, W. W. & Hsu, W. May 1 2018 In : Geriatric Nursing. 39, 3, p. 279-284 6 p.

Research output: Contribution to journalArticle

Presbycusis
Feasibility Studies
Hearing Loss
Hearing
Patient Care

A multi-center preclinical study of gadoxetate DCE-MRI in rats as a biomarker of drug induced inhibition of liver transporter function

Karageorgis, A., Lenhard, S. C., Yerby, B., Forsgren, M. F., Liachenko, S., Johansson, E., Pilling, M. A., Peterson, R. A., Yang, X., Williams, D. P., Ungersma, S. E., Morgan, R. E., Brouwer, K. L. R., Jucker, B. M. & Hockings, P. D. May 1 2018 In : PloS one. 13, 5, e0197213

Research output: Contribution to journalArticle

Slip forming
Thallium alloys
rifampicin
Rifampin
magnetic resonance imaging

A Multidisciplinary Consensus for Clinical Care and Research Needs for Sturge-Weber Syndrome

De la Torre, A. J., Luat, A. F., Juhász, C., Ho, M. L., Argersinger, D. P., Cavuoto, K. M., Enriquez-Algeciras, M., Tikkanen, S., North, P., Burkhart, C. N., Chugani, H. T., Ball, K. L., Pinto, A. L. & Loeb, J. A. Jan 1 2018 (Accepted/In press) In : Pediatric Neurology.

Research output: Contribution to journalArticle

Sturge-Weber Syndrome
Disease Progression
Tissue Banks
Neurocutaneous Syndromes
Patient Participation

A multi-level examination of the experiences of female sex workers living with HIV along the continuum of care in the Dominican Republic

Zulliger, R., Kennedy, C., Barrington, C., Perez, M., Donastorg, Y. & Kerrigan, D. Aug 3 2018 In : Global Public Health. 13, 8, p. 1020-1034 15 p.

Research output: Contribution to journalArticle

Dominican Republic
Sex Workers
Continuity of Patient Care
HIV
Economics
1 Citations

A multilinguistic approach to evaluating student spelling in writing samples

Quick, N. & Erickson, K. Jul 1 2018 In : Language, Speech, and Hearing Services in Schools. 49, 3, p. 509-523 15 p.

Research output: Contribution to journalArticle

Linguistics
Students
Language Arts
Language
language

A multimodal analgesic protocol may reduce opioid use after third molar surgery: A pilot study

Magraw, C., Pham, M., Neal, T., Kendell, B., Reside, G., Phillips, C. & White, R. P. Jan 1 2018 (Accepted/In press) In : Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology.

Research output: Contribution to journalArticle

Third Molar
Opioid Analgesics
Analgesics
Postoperative Pain
Prescriptions

A Multi-year Search for Transits of Proxima Centauri. I. Light Curves Corresponding to Published Ephemerides

Blank, D. L., Feliz, D., Collins, K. A., White, G. L., Stassun, K. G., Curtis, I. A., Hart, R., Kielkopf, J. F., Nelson, P., Relles, H., Stockdale, C., Jayawardene, B., Pennypacker, C. R., Shankland, P., Reichart, D. E., Haislip, J. B. & Kouprianov, V. V. Jun 1 2018 In : Astronomical Journal. 155, 6, 228

Research output: Contribution to journalArticle

ephemerides
transit
light curve
stars
telescopes

A Mutation in the Borcs7 Subunit of the Lysosome Regulatory BORC Complex Results in Motor Deficits and Dystrophic Axonopathy in Mice

Snouwaert, J. N., Church, R. J., Jania, L., Nguyen, M. T., Wheeler, M. L., Saintsing, A., Mieczkowski, P., Manuel de Villena, F. P., Armao, D., Moy, S. S., Lorenzo, D. N. & Koller, B. H. Jul 31 2018 In : Cell Reports. 24, 5, p. 1254-1265 12 p.

Research output: Contribution to journalArticle

Lysosomes
Mutation
Genes
Axonal Transport
Animals
1 Citations

An Aberrant Microbiota is not Strongly Associated with Incidental Colonic Diverticulosis

Jones, R. B., Fodor, A. A., Peery, A. F., Tsilimigras, M. C. B., Winglee, K., McCoy, A., Sioda, M., Sandler, R. S. & Keku, T. O. Dec 1 2018 In : Scientific Reports. 8, 1, 4951

Research output: Contribution to journalArticle

Colonic Diverticulosis
Microbiota
Diverticulum
Sigmoid Colon
Comamonadaceae

An Adeno-Associated Viral Vector Capable of Penetrating the Mucus Barrier to Inhaled Gene Therapy

Duncan, G. A., Kim, N., Colon-Cortes, Y., Rodriguez, J., Mazur, M., Birket, S. E., Rowe, S. M., West, N. E., Livraghi-Butrico, A., Boucher, R. C., Hanes, J., Aslanidi, G. & Suk, J. S. Jun 15 2018 In : Molecular Therapy - Methods and Clinical Development. 9, p. 296-304 9 p.

Research output: Contribution to journalArticle

Mucus
Genetic Therapy
Dependovirus
Transgenes
Cystic Fibrosis

An Adeno-Associated Virus-Based Toolkit for Preferential Targeting and Manipulating Quiescent Neural Stem Cells in the Adult Hippocampus

Crowther, A. J., Lim, S. A., Asrican, B., Albright, B. H., Wooten, J., Yeh, C. Y., Bao, H., Cerri, D. H., Hu, J., Ian Shih, Y. Y., Asokan, A. & Song, J. Mar 13 2018 In : Stem Cell Reports. 10, 3, p. 1146-1159 14 p.

Research output: Contribution to journalArticle

Dependovirus
Neural Stem Cells
Hippocampus
Cell Lineage
Transgenes
1 Citations

An advance care planning video decision support tool for nursing home residents with advanced dementia: A cluster randomized clinical trial

Mitchell, S. L., Shaffer, M. L., Cohen, S., Hanson, L. C., Habtemariam, D. & Volandes, A. E. Jul 1 2018 In : JAMA Internal Medicine. 178, 7, p. 961-969 9 p.

Research output: Contribution to journalArticle

Advance Care Planning
Nursing Homes
Enteral Nutrition
Dementia
Randomized Controlled Trials

An algorithm-based approach for behavior and disease management in children

Meyer, B. D., Lee, J. Y., Thikkurissy, S., Casamassimo, P. S. & Vann, W. F. Mar 1 2018 In : Pediatric dentistry. 40, 2, p. 89-92 4 p.

Research output: Contribution to journalArticle

Choice Behavior
Disease Management
Pediatric Dentistry
Dental Care
Quality of Health Care

Analysis-aware microscopy video compression

Shao, C., Cribb, J., Osborne, L. D., O'Brien, E. T., Superfine, R., Mayer-Patel, K. & Taylor, R. M. Jul 1 2018 In : Microscopy Research and Technique. 81, 7, p. 693-703 11 p.

Research output: Contribution to journalArticle

video compression
Video Microscopy
Image compression
Microscopic examination
microscopy
1 Citations

Analysis of collagen and elastin cross-links

Yamauchi, M., Taga, Y., Hattori, S., Shiiba, M. & Terajima, M. Jan 1 2018 Methods in Cell Biology. Academic Press Inc., p. 1-39 39 p. (Methods in Cell Biology; vol. 143)

Research output: Chapter in Book/Report/Conference proceedingChapter

Elastin
Lysine
Collagen
Hydroxylysine
Protein-Lysine 6-Oxidase

Analysis of human C24 bile acids metabolome in serum and urine based on enzyme digestion of conjugated bile acids and LC-MS determination of unconjugated bile acids

Zhu, P., Zhang, J., Chen, Y., Yin, S., Su, M., Xie, G., Brouwer, K. L. R., Liu, C., Lan, K. & Jia, W. Jun 16 2018 (Accepted/In press) In : Analytical and bioanalytical chemistry. p. 1-14 14 p.

Research output: Contribution to journalArticle

Metabolome
Bile Acids and Salts
Digestion
Quality of service
Enzymes

Analysis of multiple survival events in generalized case-cohort designs

Kim, S., Zeng, D. & Cai, J. Jan 1 2018 (Accepted/In press) In : Biometrics.

Research output: Contribution to journalArticle

Case-cohort Design
Survival Analysis
Atherosclerosis
Weights and Measures
Weighting

Analysis of risk factors associated with unilateral hearing loss in children who initially passed newborn hearing screening

Appelbaum, E. N., Howell, J. B., Chapman, D., Pandya, A. & Dodson, K. M. Mar 1 2018 In : International Journal of Pediatric Otorhinolaryngology. 106, p. 100-104 5 p.

Research output: Contribution to journalArticle

Unilateral Hearing Loss
Hearing
Newborn Infant
Hearing Loss
Craniofacial Abnormalities

Analysis of threshold stenosis by multiplanar venogram and intravascular ultrasound examination for predicting clinical improvement after iliofemoral vein stenting in the VIDIO trial

Gagne, P. J., Gasparis, A., Black, S., Thorpe, P., Passman, M., Vedantham, S., Marston, W. & Iafrati, M. Jan 1 2018 In : Journal of Vascular Surgery: Venous and Lymphatic Disorders. 6, 1, p. 48-56.e1

Research output: Contribution to journalArticle

Veins
Pathologic Constriction
Phlebography
Area Under Curve
ROC Curve
1 Citations

Analytical and biological variation in repeated sweat chloride concentrations in clinical trials for CFTR modulator therapy

LeGrys, V. A., Moon, T. C., Laux, J., Rock, M. J. & Accurso, F. Jan 1 2018 In : Journal of Cystic Fibrosis. 17, 1, p. 43-49 7 p.

Research output: Contribution to journalArticle

Analyzing the Human Serum Antibody Responses to a Live Attenuated Tetravalent Dengue Vaccine Candidate

Swanstrom, J. A., Henein, S., Plante, J. A., Yount, B. L., Widman, D. G., Gallichotte, E. N., Dean, H. J., Osorio, J. E., Partidos, C. D., De Silva, A. M. & Baric, R. S. May 25 2018 In : Journal of Infectious Diseases. 217, 12, p. 1932-1941 10 p.

Research output: Contribution to journalArticle

Dengue Vaccines
Antibody Formation
Epitopes
Serum
Vaccines

Anatomical Landmark based Deep Feature Representation for MR Images in Brain Disease Diagnosis

Liu, M., Zhang, J., Nie, D., Yap, P. T. & Shen, D. Jan 9 2018 (Accepted/In press) In : IEEE Journal of Biomedical and Health Informatics.

Research output: Contribution to journalArticle

Magnetic levitation vehicles
Neurodegenerative diseases
Image Enhancement
Neuroimaging
Computer aided diagnosis
Vocal Cords
Laryngoscopy
Paralysis
Anatomy
Neck

Anatomy-guided joint tissue segmentation and topological correction for 6-month infant brain MRI with risk of autism

Wang, L., Li, G., Adeli, E., Liu, M., Wu, Z., Meng, Y., Lin, W. & Shen, D. Jun 1 2018 In : Human Brain Mapping. 39, 6, p. 2609-2623 15 p.

Research output: Contribution to journalArticle

Autistic Disorder
Anatomy
Joints
Brain
Biomarkers

An attenuated Salmonella enterica serovar Typhimurium strain and galactooligosaccharides accelerate clearance of Salmonella infections in poultry through modifications to the gut microbiome

Azcarate-Peril, M. A., Butz, N., Cadenas, M. B., Koci, M., Ballou, A., Mendoza, M., Ali, R. & Hassan, H. Mar 1 2018 In : Applied and Environmental Microbiology. 84, 5, e02526-17

Research output: Contribution to journalArticle

Digestive system
galactooligosaccharides
bacterial disease
Prebiotics
digestive system

A naturally fluorescent Mgp transgenic mouse for angiogenesis and glaucoma longitudinal studies

Asokan, P., Mitra, R. N., Periasamy, R., Han, Z. & Borrás, T. Feb 1 2018 In : Investigative Ophthalmology and Visual Science. 59, 2, p. 746-756 11 p.

Research output: Contribution to journalArticle

Trabecular Meshwork
Glaucoma
Transgenic Mice
Longitudinal Studies
Vascular Smooth Muscle

And Now, Death by Proton Pump Inhibitor?

Dougherty, M. & Dellon, E. S. Feb 1 2018 In : Gastroenterology. 154, 3, p. 746-747 2 p.

Research output: Contribution to journalComment/debate

Proton Pump Inhibitors