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Data storage equipment Engineering & Materials Science
Proteins Medicine & Life Sciences
RNA Medicine & Life Sciences
Resource allocation Engineering & Materials Science
Dynamic loads Engineering & Materials Science
OpenMP Mathematics
Genome Medicine & Life Sciences
Decomposition Engineering & Materials Science

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Projects 1992 2018

Research Output 1982 2016

  • 8295 Citations
  • 25 h-Index
  • 44 Article
  • 34 Conference contribution
  • 1 Chapter
  • 1 Editorial
9 Citations

Robust detection of alternative splicing in a population of single cells

Welch, J. D., Hu, Y. & Prins, J. F. May 5 2016 In : Nucleic Acids Research. 44, 8, p. e73

Research output: Research - peer-reviewArticle

Alternative Splicing
Population
Protein Isoforms
Genes
Noise
11 Citations

SLICER: Inferring branched, nonlinear cellular trajectories from single cell RNA-seq data

Welch, J. D., Hartemink, A. J. & Prins, J. F. May 23 2016 In : Genome Biology. 17, 1, 106

Research output: Research - peer-reviewArticle

trajectories
RNA
cells
trajectory
genes
584 Citations

Comprehensive genomic characterization of head and neck squamous cell carcinomas

Lawrence, M. S. , Sougnez, C. , Lichtenstein, L. , Cibulskis, K. , Lander, E. , Gabriel, S. B. , Getz, G. , Ally, A. , Balasundaram, M. , Birol, I. , Bowlby, R. , Brooks, D. , Butterfield, Y. S. N. , Carlsen, R. , Cheng, D. , Chu, A. , Dhalla, N. , Guin, R. , Holt, R. A. , Jones, S. J. M. & 291 others Lee, D., Li, H. I., Marra, M. A., Mayo, M., Moore, R. A., Mungall, A. J., Robertson, A. G., Schein, J. E., Sipahimalani, P., Tam, A., Thiessen, N., Wong, T., Protopopov, A., Santoso, N., Lee, S., Parfenov, M., Zhang, J., Mahadeshwar, H. S., Tang, J., Ren, X., Seth, S., Haseley, P., Zeng, D., Yang, L., Xu, A. W., Song, X., Pantazi, A., Bristow, C. A., Hadjipanayis, A., Seidman, J., Chin, L., Park, P. J., Kucherlapati, R., Akbani, R., Casasent, T., Liu, W., Lu, Y., Mills, G., Motter, T., Weinstein, J., Diao, L., Wang, J., Hong Fan, Y., Liu, J., Wang, K., Auman, J. T., Balu, S., Bodenheimer, T., Buda, E., Hayes, D. N., Hoadley, K. A., Hoyle, A. P., Jefferys, S. R., Jones, C. D., Kimes, P. K., Liu, Y., Marron, J. S., Meng, S., Mieczkowski, P. A., Mose, L. E., Parker, J. S., Perou, C. M., Prins, J. F., Roach, J., Shi, Y., Simons, J. V., Singh, D., Soloway, M. G., Tan, D., Veluvolu, U., Walter, V., Waring, S., Wilkerson, M. D., Wu, J., Zhao, N., Cherniack, A. D., Hammerman, P. S., Tward, A. D., Pedamallu, C. S., Saksena, G., Jung, J., Ojesina, A. I., Carter, S. L., Zack, T. I., Schumacher, S. E., Beroukhim, R., Freeman, S. S., Meyerson, M., Cho, J., Noble, M. S., DiCara, D., Zhang, H., Heiman, D. I., Gehlenborg, N., Voet, D., Lin, P., Frazer, S., Stojanov, P., Liu, Y., Zou, L., Kim, J., Muzny, D., Doddapaneni, H. V., Kovar, C., Reid, J., Morton, D., Han, Y., Hale, W., Chao, H., Chang, K., Drummond, J. A., Gibbs, R. A., Kakkar, N., Wheeler, D., Xi, L., Ciriello, G., Ladanyi, M., Lee, W., Ramirez, R., Sander, C., Shen, R., Sinha, R., Weinhold, N., Taylor, B. S., Aksoy, B. A., Dresdner, G., Gao, J., Gross, B., Jacobsen, A., Reva, B., Schultz, N., Sumer, S. O., Sun, Y., Chan, T. A., Morris, L. G., Stuart, J., Benz, S., Ng, S., Benz, C., Yau, C., Baylin, S. B., Cope, L., Danilova, L., Herman, J. G., Bootwalla, M., Maglinte, D. T., Laird, P. W., Triche, T., Weisenberger, D. J., Van Den Berg, D. J., Agrawal, N., Bishop, J., Boutros, P. C., Bruce, J. P., Byers, L. A., Califano, J., Carey, T. E., Chen, Z., Cheng, H., Chiosea, S. I., Cohen, E., Diergaarde, B., Egloff, A. M., El-Naggar, A. K., Ferris, R. L., Frederick, M. J., Grandis, J. R., Guo, Y., Haddad, R. I., Harris, T., Hui, A. B. Y., Lee, J. J., Lippman, S. M., Liu, F. F., McHugh, J. B., Myers, J., Ng, P. K. S., Perez-Ordonez, B., Pickering, C. R., Prystowsky, M., Romkes, M., Saleh, A. D., Sartor, M. A., Seethala, R., Seiwert, T. Y., Si, H., Van Waes, C., Waggott, D. M., Wiznerowicz, M., Yarbrough, W. G., Zhang, J., Zuo, Z., Burnett, K., Crain, D., Gardner, J., Lau, K., Mallery, D., Morris, S., Paulauskis, J., Penny, R., Shelton, C., Shelton, T., Sherman, M., Yena, P., Black, A. D., Bowen, J., Frick, J., Gastier-Foster, J. M., Harper, H. A., Leraas, K., Lichtenberg, T. M., Ramirez, N. C., Wise, L., Zmuda, E., Baboud, J., Jensen, M. A., Kahn, A. B., Pihl, T. D., Pot, D. A., Srinivasan, D., Walton, J. S., Wan, Y., Burton, R. A., Davidsen, T., Demchok, J. A., Eley, G., Ferguson, M. L., Mills Shaw, K. R., Ozenberger, B. A., Sheth, M., Sofia, H. J., Tarnuzzer, R., Wang, Z., Yang, L., Zenklusen, J. C., Saller, C., Tarvin, K., Chen, C., Bollag, R., Weinberger, P., Golusiński, W., Golusiński, P., Ibbs, M., Korski, K., Mackiewicz, A., Suchorska, W., Szybiak, B., Curley, E., Beard, C., Mitchell, C., Sandusky, G., Ahn, J., Khan, Z., Irish, J., Waldron, J., William, W. N., Egea, S., Gomez-Fernandez, C., Herbert, L., Bradford, C. R., Chepeha, D. B., Haddad, A. S., Jones, T. R., Komarck, C. M., Malakh, M., Moyer, J. S., Nguyen, A., Peterson, L. A., Prince, M. E., Rozek, L. S., Taylor, E. G., Walline, H. M., Wolf, G. T., Boice, L., Chera, B. S., Funkhouser, W. K., Gulley, M. L., Hackman, T. G., Hayward, M. C., Huang, M., Rathmell, W. K., Salazar, A. H., Shockley, W. W., Shores, C. G., Thorne, L., Weissler, M. C., Wrenn, S., Zanation, A. M., Brown, B. T., Pham, M. & The Cancer Genome Atlas Network Jan 29 2015 In : Nature. 517, 7536, p. 576-582 7 p.

Research output: Research - peer-reviewArticle

Mutation
Neoplasms
Carcinoma, squamous cell of head and neck
TNF Receptor-Associated Factor 3
cdc Genes
6 Citations

EnD-Seq and AppEnD: Sequencing 3' ends to identify nontemplated tails and degradation intermediates

Welch, J. D., Slevin, M. K., Tatomer, D. C., Duronio, R. J., Prins, J. F. & Marzluff, W. F. Jul 1 2015 In : RNA. 21, 7, p. 1375-1389 15 p.

Research output: Research - peer-reviewArticle

Histones
Tail
RNA
Messenger RNA
RNA Sequence Analysis
18 Citations

Pseudogenes transcribed in breast invasive carcinoma show subtype-specific expression and ceRNA potential

Welch, J. D., Baran-Gale, J., Perou, C. M., Sethupathy, P. & Prins, J. F. Feb 22 2015 In : BMC Genomics. 16, 1, 113

Research output: Research - peer-reviewArticle

Pseudogenes
Breast Neoplasms
MicroRNAs
Neoplasms
RNA