Research Output 1973 2019

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2019

Automatic brain labeling via multi-atlas guided fully convolutional networks

Fang, L., Zhang, L., Nie, D., Cao, X., Rekik, I., Lee, S. W., He, H. & Shen, D., Jan 1 2019, In : Medical Image Analysis. 51, p. 157-168 12 p.

Research output: Contribution to journalArticle

Brain mapping
Brain Mapping
Atlases
Convolution
Labeling

First-year development of modules and hubs in infant brain functional networks

Wen, X., Zhang, H., Li, G., Liu, M., Yin, W., Lin, W., Zhang, J. & Shen, D., Jan 15 2019, In : NeuroImage. 185, p. 222-235 14 p.

Research output: Contribution to journalArticle

Brain
Magnetic Resonance Imaging
Connectome
Group Structure
Newborn Infant

Multimodal hyper-connectivity of functional networks using functionally-weighted LASSO for MCI classification

Li, Y., Liu, J., Gao, X., Jie, B., Kim, M., Yap, P. T., Wee, C. Y. & Shen, D., Feb 1 2019, In : Medical Image Analysis. 52, p. 80-96 17 p.

Research output: Contribution to journalArticle

Inference engines
Regression analysis
Brain
Blood
Regression Analysis
2018

18F-3′-Deoxy-3′-Fluorothymidine Positron Emission Tomography Imaging for the Prediction of Acute Graft-Versus-Host Disease in Mouse Hematopoietic Stem Cell Transplant Models

Lee, Y. Z., Akinnagbe-Zusterzeel, E., Fowler, K. A. & Coghill, J. M., Nov 1 2018, In : Biology of Blood and Marrow Transplantation. 24, 11, p. 2184-2189 6 p.

Research output: Contribution to journalArticle

Graft vs Host Disease
Hematopoietic Stem Cells
Positron-Emission Tomography
Transplants
T-Lymphocytes
1 Citations

3D conditional generative adversarial networks for high-quality PET image estimation at low dose

Wang, Y., Yu, B., Wang, L., Zu, C., Lalush, D. S., Lin, W., Wu, X., Zhou, J., Shen, D. & Zhou, L., Jul 1 2018, In : NeuroImage. 174, p. 550-562 13 p.

Research output: Contribution to journalArticle

Positron-Emission Tomography
Biochemical Phenomena
Radioactive Tracers
Physiological Phenomena
Benchmarking
1 Citations

3-D Fully Convolutional Networks for Multimodal Isointense Infant Brain Image Segmentation

Nie, D., Wang, L., Adeli, E., Lao, C., Lin, W. & Shen, D., Feb 8 2018, (Accepted/In press) In : IEEE Transactions on Cybernetics.

Research output: Contribution to journalArticle

Image segmentation
Brain
Tissue
Magnetic resonance
Network architecture

A computational method for longitudinal mapping of orientation-specific expansion of cortical surface in infants

Xia, J., Wang, F., Meng, Y., Wu, Z., Wang, L., Lin, W., Zhang, C., Shen, D. & Li, G., Oct 1 2018, In : Medical Image Analysis. 49, p. 46-59 14 p.

Research output: Contribution to journalArticle

Computational methods
Term Birth
Least-Squares Analysis
Tensors
Brain

Adaptive decision-making of breast cancer mammography screening: A heuristic-based regression model

Wang, F., Zhang, S. & Henderson, L. M., Apr 1 2018, In : Omega (United Kingdom). 76, p. 70-84 15 p.

Research output: Contribution to journalArticle

Decision making
Screening
Mammography
Heuristics
Regression model

A Generative Model for OCT Retinal Layer Segmentation by Groupwise Curve Alignment

Duan, W., Zheng, Y., Ding, Y., Hou, S., Tang, Y., Xu, Y., Qin, M., Wu, J., Shen, D. & Bi, H., Apr 16 2018, In : IEEE Access. 6, p. 25130-25141 12 p.

Research output: Contribution to journalArticle

Thickness gages
Ophthalmology
Thickness measurement
Optical tomography
Electronic mail
1 Citations

A Mutation in the Borcs7 Subunit of the Lysosome Regulatory BORC Complex Results in Motor Deficits and Dystrophic Axonopathy in Mice

Snouwaert, J. N., Church, R. J., Jania, L., Nguyen, M. T., Wheeler, M. L., Saintsing, A., Mieczkowski, P., Manuel de Villena, F. P., Armao, D., Moy, S. S., Lorenzo, D. N. & Koller, B. H., Jul 31 2018, In : Cell Reports. 24, 5, p. 1254-1265 12 p.

Research output: Contribution to journalArticle

Lysosomes
Mutation
Genes
Axonal Transport
Animals
1 Citations

Anatomical Landmark Based Deep Feature Representation for MR Images in Brain Disease Diagnosis

Liu, M., Zhang, J., Nie, D., Yap, P. T. & Shen, D., Sep 1 2018, In : IEEE Journal of Biomedical and Health Informatics. 22, 5, p. 1476-1485 10 p., 8253440.

Research output: Contribution to journalArticle

Brain Diseases
Magnetic resonance
Brain
Magnetic Resonance Spectroscopy
Alzheimer Disease
Vocal Cords
Laryngoscopy
Paralysis
Anatomy
Neck

Anatomy-guided joint tissue segmentation and topological correction for 6-month infant brain MRI with risk of autism

Wang, L., Li, G., Adeli, E., Liu, M., Wu, Z., Meng, Y., Lin, W. & Shen, D., Jun 1 2018, In : Human Brain Mapping. 39, 6, p. 2609-2623 15 p.

Research output: Contribution to journalArticle

Autistic Disorder
Anatomy
Joints
Brain
Biomarkers

Angular Upsampling in Infant Diffusion MRI Using Neighborhood Matching in x-q Space

Chen, G., Dong, B., Zhang, Y., Lin, W., Shen, D. & Yap, P. T., Sep 7 2018, In : Frontiers in Neuroinformatics. 12, 57.

Research output: Contribution to journalArticle

Diffusion Magnetic Resonance Imaging
Magnetic resonance imaging
Inverse problems
Interpolation
Water
1 Citations

A Novel 18 F-Labeling Method for the Synthesis of [ 18 F]-Piperidine-Containing Ligands as Potential PET Radiotracers for σ Receptors

Ortiz, G. X., Chansaenpak, K., Wang, M., Ma, X., Wang, H., Li, Z. & Wang, Q., Mar 1 2018, In : Synlett. 29, 4, p. 410-414 5 p.

Research output: Contribution to journalArticle

sigma Receptors
Alkenes
Labeling
Ligands
Pharmacokinetics

Application of machine learning to automated analysis of cerebral edema in large cohorts of ischemic stroke patients

Dhar, R., Chen, Y., An, H. & Lee, J. M., Aug 21 2018, In : Frontiers in Neurology. 9, AUG, 687.

Research output: Contribution to journalArticle

Brain Edema
Cerebrospinal Fluid
Stroke
Edema
Cone-Beam Computed Tomography

Association between general joint hypermobility and knee, hip, and lumbar spine osteoarthritis by race: A cross-sectional study

Flowers, P. P. E., Cleveland, R. J., Schwartz, T. A., Nelson, A. E., Kraus, V. B., Hillstrom, H. J., Goode, A. P., Hannan, M. T., Renner, J. B., Jordan, J. M. & Golightly, Y. M., Apr 18 2018, In : Arthritis Research and Therapy. 20, 1, 76.

Research output: Contribution to journalArticle

Spine Osteoarthritis
Joint Instability
Osteoarthritis
African Americans
Hip

Associations between cartilage proteoglycan density and patient outcomes 12 months following anterior cruciate ligament reconstruction

Pietrosimone, B., Nissman, D., Padua, D. A., Blackburn, J. T., Harkey, M. S., Creighton, R. A., Kamath, G. M., Healy, K., Schmitz, R., Driban, J. B., Marshall, S. W., Jordan, J. M. & Spang, J. T., Jan 1 2018, In : Knee. 25, 1, p. 118-129 12 p.

Research output: Contribution to journalArticle

Anterior Cruciate Ligament Reconstruction
Proteoglycans
Thigh
Knee Injuries
Knee Osteoarthritis
1 Citations
Anterior Cruciate Ligament Reconstruction
Thigh
Cartilage
Magnetic Resonance Imaging
Extremities
Knee Osteoarthritis
Chemokine CCL2
Biomarkers
Osteoarthritis
Logistics

Best Practice Guidelines for CT-Guided Interventional Procedures

Society of Interventional Radiology Health and Safety Committee, Apr 1 2018, In : Journal of Vascular and Interventional Radiology. 29, 4, p. 518-519 2 p.

Research output: Contribution to journalArticle

Practice Guidelines
2 Citations

Beyond sarcopenia: Characterization and integration of skeletal muscle quantity and radiodensity in a curable breast cancer population

Weinberg, M. S., Shachar, S. S., Muss, H. B., Deal, A. M., Popuri, K., Yu, H., Nyrop, K. A., Alston, S. M. & Williams, G. R., May 1 2018, In : Breast Journal. 24, 3, p. 278-284 7 p.

Research output: Contribution to journalArticle

Sarcopenia
Skeletal Muscle
Breast Neoplasms
Population
Tomography
1 Citations

Brain-wide Genome-wide Association Study for Alzheimer's Disease via Joint Projection Learning and Sparse Regression Model

Zhou, T., Thung, K. H., Liu, M. & Shen, D., Apr 6 2018, (Accepted/In press) In : IEEE Transactions on Biomedical Engineering.

Research output: Contribution to journalArticle

Brain
Genes
Imaging techniques
Labels
Neuroimaging
1 Citations

Building a culture of safety in interventional radiology

du Pisanie, J. L. & Dixon, R., Jan 1 2018, (Accepted/In press) In : Techniques in Vascular and Interventional Radiology.

Research output: Contribution to journalArticle

Safety Management
Interventional Radiology
Health Services Research
Safety
Medical Errors

CAPTURE: Consistently Acquired Projections for Tuned and Robust Estimation: A Self-Navigated Respiratory Motion Correction Approach

Eldeniz, C., Fraum, T., Salter, A., Chen, Y., Gach, H. M., Parikh, P. J., Fowler, K. J. & An, H., May 1 2018, In : Investigative Radiology. 53, 5, p. 293-305 13 p.

Research output: Contribution to journalArticle

Respiration
Health Insurance Portability and Accountability Act
Research Ethics Committees
Informed Consent
Healthy Volunteers

Cavitary plaques in otospongiosis: CT findings and clinical implications

Puac, P., Rodríguez, A., Lin, H. C., Onofrj, V., Lin, F. C., Hung, S. C., Zamora, C. & Castillo, M., Jun 1 2018, In : American Journal of Neuroradiology. 39, 6, p. 1135-1139 5 p.

Research output: Contribution to journalArticle

Otosclerosis
Cochlear Implantation
Sensorineural Hearing Loss
Temporal Bone
Hearing Loss
3 Citations

Circulating biomarkers in extremely preterm infants associated with ultrasound indicators of brain damage

Leviton, A., Allred, E. N., Fichorova, R. N., O'Shea, T. M., Fordham, L. A., Kuban, K. K. C. & Dammann, O., May 1 2018, In : European Journal of Paediatric Neurology. 22, 3, p. 440-450 11 p.

Research output: Contribution to journalArticle

Extremely Premature Infants
Biomarkers
Brain
Inflammation
Blood Proteins

Cognitive Assessment Prediction in Alzheimer’s Disease by Multi-Layer Multi-Target Regression

Wang, X., Zhen, X., Li, Q., Shen, D. & Huang, H., May 25 2018, (Accepted/In press) In : Neuroinformatics. p. 1-10 10 p.

Research output: Contribution to journalArticle

Biomarkers
Alzheimer Disease
Learning
Neuroimaging
Glossaries

Comparative Analysis of Cone-Beam CT Angiogram and Conventional CT Angiogram for Prostatic Artery Identification Prior to Embolization

Desai, H., Yu, H., Ohana, E., Gunnell, E. T., Kim, J. & Isaacson, A. J., Feb 1 2018, In : Journal of Vascular and Interventional Radiology. 29, 2, p. 229-232 4 p.

Research output: Contribution to journalArticle

Cone-Beam Computed Tomography
Angiography
Arteries
Tomography
Signal-To-Noise Ratio
1 Citations
cartilage
walking
landing
Thigh
Walking

Contributions of symptomatic osteoarthritis and physical function to incident cardiovascular disease

Corsi, M., Alvarez, C., Callahan, L. F., Cleveland, R. J., Golightly, Y. M., Jordan, J. M., Nelson, A. E., Renner, J. B., Tsai, A. & Allen, K. D., Nov 10 2018, In : BMC musculoskeletal disorders. 19, 1, 1 p.

Research output: Contribution to journalArticle

Osteoarthritis
Cardiovascular Diseases
Knee Osteoarthritis
Odds Ratio
Health
2 Citations

Conversion and time-to-conversion predictions of mild cognitive impairment using low-rank affinity pursuit denoising and matrix completion

for the Alzheimer's Disease Neuroimaging Initiative, Apr 1 2018, In : Medical Image Analysis. 45, p. 68-82 15 p.

Research output: Contribution to journalArticle

Neuroimaging
Linear regression
Feature extraction
Survival Analysis
Longitudinal Studies

Cumulative risk distribution for interval invasive second breast cancers after negative surveillance mammography

Lee, J. M., Abraham, L., Lam, D. L., Buist, D. S. M., Kerlikowske, K., Miglioretti, D. L., Houssami, N., Lehman, C. D., Henderson, L. M. & Hubbard, R. A., Jul 10 2018, In : Journal of Clinical Oncology. 36, 20, p. 2070-2077 8 p.

Research output: Contribution to journalArticle

Second Primary Neoplasms
Mammography
Breast Neoplasms
Neoplasms
Carcinoma, Intraductal, Noninfiltrating
1 Citations

Data-driven graph construction and graph learning: A review

Qiao, L., Zhang, L., Chen, S. & Shen, D., Jan 1 2018, (Accepted/In press) In : Neurocomputing.

Research output: Contribution to journalArticle

Learning
Learning algorithms
Graph theory
Supervised learning
Learning systems
2 Citations

Deep embedding convolutional neural network for synthesizing CT image from T1-Weighted MR image

Xiang, L., Wang, Q., Nie, D., Zhang, L., Jin, X., Qiao, Y. & Shen, D., Jul 1 2018, In : Medical Image Analysis. 47, p. 31-44 14 p.

Research output: Contribution to journalArticle

Magnetic resonance
Tomography
Magnetic Resonance Spectroscopy
Neural networks
Neuroimaging

Defining multiple joint osteoarthritis, its frequency and impact in a community-based cohort

Gullo, T. R., Golightly, Y. M., Cleveland, R. J., Renner, J. B., Callahan, L. F., Jordan, J. M., Kraus, V. B. & Nelson, A. E., Jan 1 2018, (Accepted/In press) In : Seminars in Arthritis and Rheumatism.

Research output: Contribution to journalArticle

Osteoarthritis
Joints
Librarians
Health
Guidelines

Deformable image registration using a cue-aware deep regression network

Cao, X., Yang, J., Zhang, J., Wang, Q., Yap, P. T. & Shen, D., Sep 1 2018, In : IEEE Transactions on Biomedical Engineering. 65, 9, p. 1900-1911 12 p., 8331111.

Research output: Contribution to journalArticle

Image registration
Tuning
Sampling
Experiments
2 Citations

Development of Intrathecal AAV9 Gene Therapy for Giant Axonal Neuropathy

Bailey, R. M., Armao, D., Nagabhushan Kalburgi, S. & Gray, S. J., Jun 15 2018, In : Molecular Therapy - Methods and Clinical Development. 9, p. 160-171 12 p.

Research output: Contribution to journalArticle

Giant Axonal Neuropathy
Genetic Therapy
Intermediate Filaments
Clinical Trials, Phase I
Viral Genes

Diagnosis of Autism Spectrum Disorders Using Multi-Level High-Order Functional Networks Derived From Resting-State Functional MRI

Zhao, F., Zhang, H., Rekik, I., An, Z. & Shen, D., May 14 2018, In : Frontiers in Human Neuroscience. 12, 184.

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Brain
Brain Diseases
Autism Spectrum Disorder

Diagnostic Usefulness of Combination of Diffusion-weighted Imaging and T2WI, Including Apparent Diffusion Coefficient in Breast Lesions: Assessment of Histologic Grade

Kim, K. W., Kuzmiak, C. M., Kim, Y. J., Seo, J. Y., Jung, H. K. & Lee, M. S., May 1 2018, In : Academic radiology. 25, 5, p. 643-652 10 p.

Research output: Contribution to journalArticle

Breast
Magnetic Resonance Imaging
Ductal Carcinoma
Carcinoma, Intraductal, Noninfiltrating
Lobular Carcinoma
1 Citations

Discovering cortical sulcal folding patterns in neonates using large-scale dataset

Meng, Y., Li, G., Wang, L., Lin, W., Gilmore, J. H. & Shen, D., Sep 1 2018, In : Human Brain Mapping. 39, 9, p. 3625-3635 11 p.

Research output: Contribution to journalArticle

Term Birth
Brain
Brain Diseases
Temporal Lobe
Cerebral Cortex

Dual-layer spectral detector CT: non-inferiority assessment compared to dual-source dual-energy CT in discriminating uric acid from non-uric acid renal stones ex vivo

Ananthakrishnan, L., Duan, X., Xi, Y., Lewis, M. A., Pearle, M. S., Antonelli, J. A., Goerne, H., Kolitz, E. M., Abbara, S., Lenkinski, R. E., Fielding, J. R. & Leyendecker, J. R., Nov 1 2018, In : Abdominal Radiology. 43, 11, p. 3075-3081 7 p.

Research output: Contribution to journalArticle

Uric Acid
Kidney
Acids
Area Under Curve
Delivery of Health Care

Dynamic fMRI networks predict success in a behavioral weight loss program among older adults

Mokhtari, F., Rejeski, W. J., Zhu, Y., Wu, G., Simpson, S. L., Burdette, J. H. & Laurienti, P. J., Jun 1 2018, In : NeuroImage. 173, p. 421-433 13 p.

Research output: Contribution to journalArticle

Weight Reduction Programs
Weight Loss
Magnetic Resonance Imaging
Life Style
Brain

Dynamic Hyper-Graph Inference Framework for Computer Assisted Diagnosis of Neurodegenerative Diseases

Zhu, Y., Zhu, X., Kim, M., Yan, J., Kaufer, D. & Wu, G., Aug 30 2018, (Accepted/In press) In : IEEE Transactions on Medical Imaging.

Research output: Contribution to journalArticle

Computer-Assisted Diagnosis
Neurodegenerative diseases
Neurodegenerative Diseases
Labels
Imaging techniques

Effective feature learning and fusion of multimodality data using stage-wise deep neural network for dementia diagnosis

Zhou, T., Thung, K. H., Zhu, X. & Shen, D., Jan 1 2018, (Accepted/In press) In : Human Brain Mapping.

Research output: Contribution to journalArticle

Dementia
Alzheimer Disease
Learning
Neuroimaging
Single Nucleotide Polymorphism
2 Citations

Effects of career duration, concussion history, and playing position on white matter microstructure and functional neural recruitment in former college and professional football athletes

Clark, M. D., Varangis, E. M. L., Champagne, A. A., Giovanello, K. S., Shi, F., Kerr, Z. Y., Smith, J. K. & Guskiewicz, K. M., Mar 1 2018, In : Radiology. 286, 3, p. 967-977 11 p.

Research output: Contribution to journalArticle

Football
Anisotropy
Athletes
History
Oxygen

Engorgement of Deep Medullary Veins in Neurosarcoidosis: A Common-Yet-Underrecognized Cerebrovascular Finding on SWI

Zamora Gonzalez, C. ARMANDO., Hung, S. C., Tomingas, C., Atkinson, C. & Castillo, M., Nov 1 2018, In : AJNR. American journal of neuroradiology. 39, 11, p. 2045-2050 6 p.

Research output: Contribution to journalArticle

Veins
Intracranial Sinus Thrombosis
Cerebrovascular Disorders
Intracranial Thrombosis
Intracranial Hemorrhages

Enhancement of Musculoskeletal Radiology Resident Education with the Use of an Individual Smart Portable Ultrasound Device (iSPUD)

Maetani, T. H., Schwartz, C., Ward, R. J. & Nissman, D. B., Dec 1 2018, In : Academic radiology. 25, 12, p. 1659-1666 8 p.

Research output: Contribution to journalArticle

Radiology
Education
Equipment and Supplies
Wrist
Galaxies

Enhancing the representation of functional connectivity networks by fusing multi-view information for autism spectrum disorder diagnosis

Huang, H., Liu, X., Jin, Y., Lee, S. W., Wee, C. Y. & Shen, D., Jan 1 2018, (Accepted/In press) In : Human Brain Mapping.

Research output: Contribution to journalArticle

Brain
Brain Diseases
Cluster Analysis
Biomarkers
Learning

Evaluating Renal Transplant Status Using Viscoelastic Response (VisR) Ultrasound

Hossain, M. M., Selzo, M. R., Hinson, R. M., Baggesen, L. M., Detwiler, R. K., Chong, W. K., Burke, L. M., Caughey, M. C., Fisher, M. W., Whitehead, S. B. & Gallippi, C. M., Jan 1 2018, (Accepted/In press) In : Ultrasound in Medicine and Biology.

Research output: Contribution to journalArticle

Allografts
Transplants
Kidney
Vascular Diseases
Elasticity